Quick update - I have package all dependencies fo xpore (and of pyensembl with it) , packages are tagged orange on the spreadsheet's "Nanopore" tab (https://docs.google.com/spreadsheets/d/1tApLhVqxRZ2VOuMH_aPUgFENQJfbLlB_PFH_Ah_q7hM/edit#gid=1806578173) - but, no idea how you are feeling about it all, but I think this better waits till after the release.
@Nilesh, I want to run pyensembl locally to ensure that it works - it is not too far from a gigabyte that is downloaded if I am interpreting the URLs right and am not erroneous, which just for testing purposes is a bit too much. Best, Steffen Am 18.05.21 um 15:15 schrieb Nilesh Patra: > > On 5/18/21 6:16 PM, Steffen Möller wrote: >> Hello, >> >> I just packaged xpore, which points to >> https://github.com/openvax/pyensembl to get various sorts of sequencing >> data, also complete genomes. I like that and address its packaging now. >> New packages are uploaded to PyPi, not release tagged, but, well, ... . > Nice. > >> In my reading this is a way to get test data for various applications of >> ours in a reproducible way. Since this packages only the routines to >> retrieve the data, not the data itself, we cannot use that for package >> autotests. However, we can still use it for testing our workflows if our >> workflow-test-environment is allowed to have internet access, which I >> think it should have. > If internet access is the only bottle-neck, there's a needs-internet > restriction[1] which can get this moving. > > [1]: https://people.debian.org/~eriberto/README.package-tests.html > > Nilesh >
