On 2021-03-26 01:58, Andreas Tille wrote: > Hi folks, > > I have packaged bamclipper[1] since it is a precondition for the > pipeline covpipe[2] which is developed and used in my institute. > (@Steffen, possibly another column in the spreadsheet.) > > Despite bamclipper is pretty easy I would love to have some autopkgtest > but I'm lacking the needed files (bam + bam.bai as well as bedpe). The > README.md[3] has an example that could be used as autopkgtest - so it > should not be a hard job for someone who has such files / knows how to > find some examples.
I found those files here[1] inside examples/ dir -- it also has outputted *.primer.bam* files, so I think it is sensible to assume that these files work. I follow this in other packages as well, when on adding certain bam or sam files, "something" happens which is good for at least a preliminary functioning test :-) I added a autopkgtest to the salsa repo, please take in a look. PS: Please consider enabling salsa CI for any new packages that you might push. I did so for this one for now. [1]: https://github.com/tommyau/bamclipper Nilesh
