Hi Steffen, On Sun, Nov 15, 2020 at 02:39:03PM +0100, Steffen Möller wrote: > >> I just checked what my installation has in this directory ... and it > >> seems like I spotted a typo (or a creative fix of a typo elsewhere) > > ? > tranlate misses the "s"
Fixed in new upload. BTW, it would be perfectly fine if you simply fix such things in a team upload. > >> I presume you would be happy for me to put there a link from cnvkit.py > >> (like bcbio expects it) to /usr/bin/cnvkit, right? > > Well, I think its orthogonal to my own happyness. If it works for > > you just do the same as in the given example package. > I added that symlink and then patched bcbio to not expect the .py since > bcbio ignored the $PATH on this one. Fine for me. Regarding the .py extension I became quite relaxed. See our package template: https://salsa.debian.org/med-team/community/package_template/-/blob/master/debian/lintian-overrides > > I think we are pretty close to snpEff due to Pierre's efforts. > > Nice! > > This may be worth a sidenote - bcbio to me is something metaphorical. We > have it in the distribution already. And now we work to get all the > runtime-dependencies in to make it functional. And snpEff is pretty high > up (it interprets the importance of nucleotide variations, you need to > have identified these variants for that, first). So, my comment on > "snpeff" being invoked was to be interpreted as "see, here we are already". Snpeff is wanted from several sided. I really hope we get it soon. Kind regards Andreas. -- http://fam-tille.de
