On 14.11.20 20:18, Steffen Möller wrote: > I presume you would be happy for me to put there a link from cnvkit.py > (like bcbio expects it) to /usr/bin/cnvkit, right?
Update: I patched bcbio to find it. While looking at the source tree of the cnvkit wrapper of bcbio I found that it references two BioConductor packages that I hence put on the spreadsheet: https://www.bioconductor.org/packages/release/bioc/html/TitanCNA.html https://bioconductor.org/packages/release/bioc/html/PureCN.html How are we with more R packages while the transition is happening? Please ping me when you think I should address their packaging. Best, Steffen
