Hi Andreas, That is the fork from Lauren and we merged the change into the main repository. The main repository is still at: https://bitbucket.org/biobakery/metaphlan2/overview
Thanks, Tin On Wed, Aug 31, 2016 at 9:11 AM Andreas Tille <[email protected]> wrote: > Hi again, > > I'm pretty sure I have seen the 2.6.0 tag right after your mail. I was > a bit busy since then and wanted to have a look now. I noticed that > metaphlan2 moved to another user on bitbucket and > > https://bitbucket.org/ljmciver/metaphlan2/downloads?tab=tags > > only shows 2.5.0 as latest tag. > > Am I missing something? > > Kind regards > > Andreas. > > On Fri, Aug 19, 2016 at 12:18:31PM +0200, Andreas Tille wrote: > > Hi Duy, > > > > thanks for the information. It might take some time since I'll be a bit > > offline-ish next week but now I know what the correct target for the > > package will be. > > > > Kind regards > > > > Andreas. > > > > On Fri, Aug 19, 2016 at 07:17:25AM +0000, Duy Tin Truong wrote: > > > Hi Andreas, > > > > > > Thanks for your explanation. We have officially updated metaphlan2 to > > > version 2.6.0 as shown in tags. > > > So, when it is convenient for you, please help to add the package of > this > > > new version. > > > > > > Many thanks, > > > Tin > > > > > > On Fri, Aug 12, 2016 at 6:31 PM Andreas Tille <[email protected]> > wrote: > > > > > > > Hi Tin, > > > > > > > > On Fri, Aug 12, 2016 at 03:30:25PM +0000, Duy Tin Truong wrote: > > > > > > However the hint ot hclust2[1] is helpful. Unfortunately I can > not > > > > find > > > > > > any description for this software. Since you might have some > > > > influence on > > > > > > this it would be great to provide a hint where I can find a > > > > description for > > > > > > a potential package. > > > > > > > > > > > hclust2 is used to plot heat-maps and not directly used in > metaphlan2.py > > > > or > > > > > strainphlan.py. In other words, metaphlan2 does not depend tightly > on > > > > this > > > > > tool. However, I will update the wiki page later. > > > > > > > > Sounds like a neat tool anyway - so if there is a description I could > > > > provide a package. > > > > > > > > > > > and here for strainphlan (another brother tool uses the same > database > > > > > > with > > > > > > > metaphlan2 and both are in the same repository and should go > > > > together, > > > > > > > strainphlan is in strainphlan.py and metaphlan2 is in > metaphlan2.py): > > > > > > > > > > > > > > > > > > https://bitbucket.org/biobakery/metaphlan2#markdown-header-pre-requisites_1 > > > > > > > > > > > > Well, the download file for metaphlan2 version 2.5 has > strainer_src and > > > > > > metaphlan2_strainer.py - is this what you mean? > > > > > > > > > > > Yes, strainer_src is now strainphlan_src and > metaphlan2_strainer.py is > > > > now > > > > > strainphlan.py. As I mentioned before, it is better to use the > latest > > > > > version of the repository now because the tutorial now fits with > the new > > > > > names: > > > > > > > > > > https://bitbucket.org/biobakery/metaphlan2#markdown-header-metagenomic-strain-level-population-genomics > > > > > > > > > > and we may not change them again :). > > > > > > > > So *if* you want to let users use the latest state of the repository > why > > > > don't you do a new versioned release to make it official. Debian > uses a > > > > system to check web pages for versioned releases. We can not sneak > into > > > > each repository nor wild guessing if it is a stable commit or not. > Is > > > > there any reason not to release say version 2.6 or 2.5.1 or whatever? > > > > > > > > Kind regards > > > > > > > > Andreas. > > > > > > > > > > [1] https://bitbucket.org/nsegata/hclust2 > > > > > > > > -- > > > > http://fam-tille.de > > > > > > > > -- > > http://fam-tille.de > > > > > > -- > http://fam-tille.de >
