Hi Andreas, Thanks for your explanation. We have officially updated metaphlan2 to version 2.6.0 as shown in tags. So, when it is convenient for you, please help to add the package of this new version.
Many thanks, Tin On Fri, Aug 12, 2016 at 6:31 PM Andreas Tille <[email protected]> wrote: > Hi Tin, > > On Fri, Aug 12, 2016 at 03:30:25PM +0000, Duy Tin Truong wrote: > > > However the hint ot hclust2[1] is helpful. Unfortunately I can not > find > > > any description for this software. Since you might have some > influence on > > > this it would be great to provide a hint where I can find a > description for > > > a potential package. > > > > > hclust2 is used to plot heat-maps and not directly used in metaphlan2.py > or > > strainphlan.py. In other words, metaphlan2 does not depend tightly on > this > > tool. However, I will update the wiki page later. > > Sounds like a neat tool anyway - so if there is a description I could > provide a package. > > > > > and here for strainphlan (another brother tool uses the same database > > > with > > > > metaphlan2 and both are in the same repository and should go > together, > > > > strainphlan is in strainphlan.py and metaphlan2 is in metaphlan2.py): > > > > > > > > https://bitbucket.org/biobakery/metaphlan2#markdown-header-pre-requisites_1 > > > > > > Well, the download file for metaphlan2 version 2.5 has strainer_src and > > > metaphlan2_strainer.py - is this what you mean? > > > > > Yes, strainer_src is now strainphlan_src and metaphlan2_strainer.py is > now > > strainphlan.py. As I mentioned before, it is better to use the latest > > version of the repository now because the tutorial now fits with the new > > names: > > > https://bitbucket.org/biobakery/metaphlan2#markdown-header-metagenomic-strain-level-population-genomics > > > > and we may not change them again :). > > So *if* you want to let users use the latest state of the repository why > don't you do a new versioned release to make it official. Debian uses a > system to check web pages for versioned releases. We can not sneak into > each repository nor wild guessing if it is a stable commit or not. Is > there any reason not to release say version 2.6 or 2.5.1 or whatever? > > Kind regards > > Andreas. > > > > [1] https://bitbucket.org/nsegata/hclust2 > > -- > http://fam-tille.de >
