----- Mail original -----
> De: "Dylan" <bob.dyb...@gmail.com>
> À: "Debian Med Project" <debian-med@lists.debian.org>
> Envoyé: Lundi 18 Avril 2016 08:11:05
> Objet: Re: Request for sponsoring: beagle
> 
> Hi,
> According to ftpmaster's comments, I removed the embedded copy of
> htsjdk and I patched some files to refer to the new htsjdk.
> But with this new patch, beagle FTBFS because jh_build searches .java
> files in .pc folder. So, I remove the .pc folder just before calling
> jh_build. I do not think it is the best solution but beagle builds
> now. Does someone have a better solution?

.pc is created with quilt when settings patches. With gbp, svn-buildpackage, 
this directory will not be present at build time, but I am surprised that 
jh_build searches for anything in .pc.
I don't think you should remove it (go against quilt and will fail unapplying 
patches). Maybe your build (build.xml, rules, ..?) makes a recursive search at 
root directory. IF this is the case, .pc should be exlcuded from search.

> 
> I also asked to upstream the source file of the pdf and he sent me a
> docx file. I do not find any information about how to integrate
> correctly a pdf from a docx file. So, I do not package the pdf
> anymore.
> 

You don't have (not mandatory) to regenerate pdf file, you can provide it as 
long as you provide the source document along with it.

Regeneration is a must to be sure everything is inline but it is accepted to 
provide pdf + source directly.

Olivier 

> Best regards,
> Dylan
> 
> 
> 
> 2016-03-26 21:45 GMT+01:00 Afif Elghraoui <a...@debian.org>:
> > Hi, Dylan,
> >
> > This looks great to me. There may be an issue with the pdf manual not
> > being built from source (although the source is probably a docx file),
> > but we'll see what the archive masters say.
> >
> 
>

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