Le Tue, Aug 19, 2014 at 07:27:48PM +0000, Andreas Tille a écrit :
> This is an automated email from the git hooks/post-receive script.
>
> tille pushed a change to branch upstream
> in repository python-pysam.
>
> from a757e53 Imported Upstream version 0.7.7
> new 547982f Imported Upstream version 0.8.0
…
> Summary of changes:
> INSTALL | 13 +
> MANIFEST.in | 82 +-
> PKG-INFO | 4 +-
> README.rst | 27 +
> doc/api.rst | 3 +-
> doc/conf.py | 14 +-
> doc/developer.rst | 48 +-
> doc/faq.rst | 10 +-
> doc/glossary.rst | 4 +-
> doc/{contents.rst => index.rst} | 4 +-
> doc/release.rst | 26 +
> doc/usage.rst | 23 +-
> {tabix => htslib}/__init__.py | 0
> htslib/bgzf.c | 1085 +
> htslib/bgzip.c | 283 +
> htslib/config.h | 3 +
(etc)
Hi Andreas,
I guess you spotted the code copy of the HTSlib in python-pysam ?
In theory, it should be easier to build python-pysam on the system's
copy, compared to the previsous situation with libbam, because
the HTSlib allows for dynamic linking.
In practice, I do not know how to do it with python modules…
I opened the following issue on GitHub's upstream tracker.
https://github.com/pysam-developers/pysam/issues/34
Have a nice day,
--
Charles
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