Hi Guys,
I have (again) tried to provide a backport build of itk4 for wheezy (to
be shipped from NeuroDebian) and got those 2 tests to fail.
926 - itkTIFFImageIOCompression_RGBTestImageJPEG_JPEG (Failed)
2168 - itkOtsuThresholdImageFilterTestShort (Failed)
Would you be so kind to share your expertise on
1. either I could consider such a failure "minor" thus probably just
excluding those tests from being run
2. or may be you see how I could easily mitigate/fix underlying problem?
Details: actually looking at 926 -- it complains "out of disk space" but I
consider it VERY unlikely since that box has it in abundance :-/
926/2518 Test #926: itkTIFFImageIOCompression_RGBTestImageJPEG_JPEG
...............................***Failed 0.10 sec
Input Filename:
/tmp/buildd/insighttoolkit4-4.5.2/BUILD/ExternalData/Testing/Data/Input/RGBTestImageJPEG.tif
Output Filename:
/tmp/buildd/insighttoolkit4-4.5.2/BUILD/Testing/Temporary/TestTIFFCompression_RGBTestImageJPEG_JPEG.tif
Compression: JPEG
Pixel type (string): rgba
Component Type is unsigned_char
Component size: 1
Number of dimensions: 2
JPEGLib: Bogus input colorspace.
Unexpected exception in ImageFileWriter
itk::ExceptionObject (0x87da1b8)
Location: "unknown"
File: /tmp/buildd/insighttoolkit4-4.5.2/Modules/IO/TIFF/src/itkTIFFImageIO.cxx
Line: 1947
Description: itk::ERROR: TIFFImageIO(0x87d49f8): TIFFImageIO: error out of disk
space
Exception detected while reading
/tmp/buildd/insighttoolkit4-4.5.2/BUILD/Testing/Temporary/TestTIFFCompression_RGBTestImageJPEG_JPEG.tif
: Could not create IO object for file
/tmp/buildd/insighttoolkit4-4.5.2/BUILD/Testing/Temporary/TestTIFFCompression_RGBTestImageJPEG_JPEG.tif
Tried to create one of the following:
MetaImageIO
GDCMImageIO
JPEGImageIO
VTKImageIO
PNGImageIO
TIFFImageIO
BMPImageIO
NrrdImageIO
GiplImageIO
NiftiImageIO
You probably failed to set a file suffix, or
set the suffix to an unsupported type.
<DartMeasurement name="BaselineImageName"
type="text/string">INVALID_BASELINE_GIVEN</DartMeasurement>
2168/2518 Test #2168: itkOtsuThresholdImageFilterTestShort
..........................................***Failed 0.13 sec
-------- Start OtsuThresholdImageFilter "" OtsuThresholdImageFilter (0x93c27b0)
RTTI typeinfo: itk::OtsuThresholdImageFilter<itk::Image<short, 2u>,
itk::Image<unsigned char, 2u>, itk::Image<unsigned char, 2u> >
Reference Count: 3
Modified Time: 66
Debug: Off
Object Name:
Observers:
StartEvent(SimpleMemberCommand)
EndEvent(SimpleMemberCommand)
ProgressEvent(SimpleMemberCommand)
IterationEvent(SimpleMemberCommand)
AbortEvent(SimpleMemberCommand)
Inputs:
Primary: (0x93c2578) *
Indexed Inputs:
0: Primary (0x93c2578)
Required Input Names: Primary
NumberOfRequiredInputs: 1
Outputs:
Primary: (0x93c4f50)
Indexed Outputs:
0: Primary (0x93c4f50)
NumberOfRequiredOutputs: 1
Number Of Threads: 8
ReleaseDataFlag: Off
ReleaseDataBeforeUpdateFlag: Off
AbortGenerateData: Off
Progress: 0
Multithreader:
RTTI typeinfo: itk::MultiThreader
Reference Count: 1
Modified Time: 35
Debug: Off
Object Name:
Observers:
none
Thread Count: 8
Global Maximum Number Of Threads: 128
Global Default Number Of Threads: 8
CoordinateTolerance: 1e-06
DirectionTolerance: 1e-06
OutsideValue: 0
InsideValue: 255
Calculator: OtsuThresholdCalculator (0x93c5098)
RTTI typeinfo:
itk::OtsuThresholdCalculator<itk::Statistics::Histogram<double,
itk::Statistics::DenseFrequencyContainer2>, short>
Reference Count: 1
Modified Time: 51
Debug: Off
Object Name:
Observers:
none
Inputs:
Primary: (0)
Indexed Inputs:
0: Primary (0)
No Required Input Names
NumberOfRequiredInputs: 0
Outputs:
Primary: (0x93c77f8)
Indexed Outputs:
0: Primary (0x93c77f8)
NumberOfRequiredOutputs: 1
Number Of Threads: 8
ReleaseDataFlag: Off
ReleaseDataBeforeUpdateFlag: On
AbortGenerateData: Off
Progress: 0
Multithreader:
RTTI typeinfo: itk::MultiThreader
Reference Count: 1
Modified Time: 46
Debug: Off
Object Name:
Observers:
none
Thread Count: 8
Global Maximum Number Of Threads: 128
Global Default Number Of Threads: 8
Threshold (computed): 0
Mask image in use: 0
Masking of output: 1
Progress | 0 | 0.00390625 | 0.0078125 | 0.0117188 | 0.015625 | 0.0195312 |
0.0234375 | 0.0273438 | 0.03125 | 0.0351562
| 0.0390625 | 0.0429688 | 0.046875 | 0.0507812 | 0.0546875 | 0.0585938 |
0.0625 | 0.0664062 | 0.0703125 | 0.0742188
| 0.078125 | 0.0820312 | 0.0859375 | 0.0898438 | 0.09375 | 0.0976562 |
0.101562 | 0.105469 | 0.109375 | 0.113281
| 0.117188 | 0.121094 | 0.125 | 0.128906 | 0.132812 | 0.136719 | 0.140625 |
0.144531 | 0.148438 | 0.152344
| 0.15625 | 0.160156 | 0.164062 | 0.167969 | 0.171875 | 0.175781 | 0.179688 |
0.183594 | 0.1875 | 0.191406
| 0.195312 | 0.199219 | 0.203125 | 0.207031 | 0.210938 | 0.214844 | 0.21875 |
0.222656 | 0.226562 | 0.230469
| 0.234375 | 0.238281 | 0.242188 | 0.246094 | 0.25 | 0.253906 | 0.257812 |
0.261719 | 0.265625 | 0.269531
| 0.273438 | 0.277344 | 0.28125 | 0.285156 | 0.289062 | 0.292969 | 0.296875 |
0.300781 | 0.304688 | 0.308594
| 0.3125 | 0.316406 | 0.320312 | 0.324219 | 0.328125 | 0.332031 | 0.335938 |
0.339844 | 0.34375 | 0.347656
| 0.351562 | 0.355469 | 0.359375 | 0.363281 | 0.367188 | 0.371094 | 0.375 |
0.378906 | 0.382812 | 0.386719
| 0.390625 | 0.394531 | 0.398438 | 0.4 | 0.4 | 0.6 | 0.6 | 0.65 | 0.7 | 0.75
| 0.8 | 0.85 | 0.9 | 0.95 | 1 | 1
Filter took 0.02 seconds.
-------- End OtsuThresholdImageFilter "" OtsuThresholdImageFilter (0x93c27b0)
RTTI typeinfo: itk::OtsuThresholdImageFilter<itk::Image<short, 2u>,
itk::Image<unsigned char, 2u>, itk::Image<unsigned char, 2u> >
Reference Count: 3
Modified Time: 66
Debug: Off
Object Name:
Observers:
StartEvent(SimpleMemberCommand)
EndEvent(SimpleMemberCommand)
ProgressEvent(SimpleMemberCommand)
IterationEvent(SimpleMemberCommand)
AbortEvent(SimpleMemberCommand)
Inputs:
Primary: (0x93c2578) *
Indexed Inputs:
0: Primary (0x93c2578)
Required Input Names: Primary
NumberOfRequiredInputs: 1
Outputs:
Primary: (0x93c4f50)
Indexed Outputs:
0: Primary (0x93c4f50)
NumberOfRequiredOutputs: 1
Number Of Threads: 8
ReleaseDataFlag: Off
ReleaseDataBeforeUpdateFlag: Off
AbortGenerateData: Off
Progress: 1
Multithreader:
RTTI typeinfo: itk::MultiThreader
Reference Count: 1
Modified Time: 35
Debug: Off
Object Name:
Observers:
none
Thread Count: 8
Global Maximum Number Of Threads: 128
Global Default Number Of Threads: 8
CoordinateTolerance: 1e-06
DirectionTolerance: 1e-06
OutsideValue: 0
InsideValue: 255
Calculator: OtsuThresholdCalculator (0x93c5098)
RTTI typeinfo:
itk::OtsuThresholdCalculator<itk::Statistics::Histogram<double,
itk::Statistics::DenseFrequencyContainer2>, short>
Reference Count: 1
Modified Time: 310
Debug: Off
Object Name:
Observers:
none
Inputs:
Primary: (0)
Indexed Inputs:
0: Primary (0)
No Required Input Names
NumberOfRequiredInputs: 0
Outputs:
Primary: (0x93c77f8)
Indexed Outputs:
0: Primary (0x93c77f8)
NumberOfRequiredOutputs: 1
Number Of Threads: 8
ReleaseDataFlag: Off
ReleaseDataBeforeUpdateFlag: On
AbortGenerateData: Off
Progress: 1
Multithreader:
RTTI typeinfo: itk::MultiThreader
Reference Count: 1
Modified Time: 46
Debug: Off
Object Name:
Observers:
none
Thread Count: 8
Global Maximum Number Of Threads: 128
Global Default Number Of Threads: 8
Threshold (computed): 14648
Mask image in use: 0
Masking of output: 1
filter->GetNumberOfHistogramBins(): 256
Computed Threshold is: 14648
<DartMeasurement name="ImageError itkOtsuThresholdImageFilterTestShort.png"
type="numeric/double">1</DartMeasurement>
<DartMeasurement name="ImageError" type="numeric/double">1</DartMeasurement>
<DartMeasurement name="ImageError Minimum"
type="numeric/double">255</DartMeasurement>
<DartMeasurement name="ImageError Maximum"
type="numeric/double">255</DartMeasurement>
<DartMeasurement name="ImageError Mean"
type="numeric/double">255</DartMeasurement>
<DartMeasurementFile name="DifferenceImage"
type="image/png">/tmp/buildd/insighttoolkit4-4.5.2/BUILD/Testing/Temporary/itkOtsuThresholdImageFilterTestShort.png.diff.png</DartMeasurementFile>
<DartMeasurementFile name="BaselineImage"
type="image/png">/tmp/buildd/insighttoolkit4-4.5.2/BUILD/Testing/Temporary/itkOtsuThresholdImageFilterTestShort.png.base.png</DartMeasurementFile>
<DartMeasurementFile name="TestImage"
type="image/png">/tmp/buildd/insighttoolkit4-4.5.2/BUILD/Testing/Temporary/itkOtsuThresholdImageFilterTestShort.png.test.png</DartMeasurementFile>
<DartMeasurement name="BaselineImageName"
type="text/string">itkOtsuThresholdImageFilterTestShort.png</DartMeasurement>
--
Yaroslav O. Halchenko, Ph.D.
http://neuro.debian.net http://www.pymvpa.org http://www.fail2ban.org
Research Scientist, Psychological and Brain Sciences Dept.
Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755
Phone: +1 (603) 646-9834 Fax: +1 (603) 646-1419
WWW: http://www.linkedin.com/in/yarik
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