Le 3/16/13 6:40 AM, Charles Plessy a écrit : > Le Fri, Mar 15, 2013 at 09:25:55AM +0100, [email protected] a écrit : >> Le 3/15/13 8:13 AM, Andreas Tille a écrit : >>> Hi, >>> >>> any volunteer to join this effort to create such images featuring >>> med-cloud packages? >> What would be a med-cloud image ? (but an image containing med-cloud >> packages) > Hi all, > > the idea behind med-cloud is to install as much tools as possible, while > limiting the size of the image. Hence it is limited to tools that do not > depend on graphical environments, but if some command-line tools would pull > hundreds of megabytes of packages just for themselves, I think that they would > not be fit for the med-cloud metapackage. > > Other from this, it should be a standard installation. Ideally we should > improve the support for Blends in tasksel, so that making a "med-cloud" image > would be only the matter of one parameter when creating an image. > > Alternatively, a user running a standard image and installing med-cloud should > have everything he needs (except data !) to run simple analysis, including the > analysis of large quantities of sequence reads. > > Further usage will show us what adjustment we need. For instance, if /tmp is > in the virtual memory, I expect that some workflow will not work when for > instance sorting multi-gigabyte BED files, etc. > > In complemnt with this, it would be great to have tutorials explaining how to > fetch data and make it ready for use with the tools that we distribute. One > solution I know is 'getdata', but did not pass beyond the proof-of-principle > stage. Can biomaj be used on the command line ? yes, web interface is only an additional tool for easier administration. > > Alternatively or in complement, we can also design a standard file hierarchy > and configure our tools to use it, so that one could prepare separately some > data repositories ready for being used from Debian Med images. > > Have a nice week-end, > > > -- > gpg key id: 4096R/326D8438 (keyring.debian.org) > Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438
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