On Thu, Nov 08, 2012 at 08:40:06AM +0100, Olivier Sallou wrote:
> > or when trying manually what the wrapper tries to do
> >
> > $ java -jar /usr/share/fastqc/fastqc.jar
> > uk.ac.babraham.FastQC.FastQCApplication
> > Skipping 'uk.ac.babraham.FastQC.FastQCApplication' which didn't exist, or
> > couldn't be read
> I will have a look but:
> It seems that the file with structure
> uk/ac/babraham/FastQC/FastQCApplication.class is missing in the jar file
> /usr/share/fastqc/fastqc.jar (you can check content with jar -tf
> /usr/share/fastqc/fastqc.jar)
Sure, this is what I did in the first place and can confirm
$ jar -tf /usr/share/fastqc/fastqc.jar | grep FastQCApplication
uk/ac/babraham/FastQC/FastQCApplication$1.class
uk/ac/babraham/FastQC/FastQCApplication.class
> > My suspicion is that simply specifying the Main-Class in debian/manifest
> > is not sufficient. Something might be wrong with the Debian home brewn
> > Makefile as quilt patch and ant+built.xml might do a better job to build
> > the Jar functionally. Any hint for doing this properly?
> Main-Class in manifest gives the default class to call when using java
> -jar myjarfile.
> If the jar needs other jar files, they need to be specified in Manifest
> too or at command line in the classpath parameter.
$ cat debian/manifest
/usr/share/fastqc/fastqc.jar:
Main-Class: uk.ac.babraham.FastQC.FastQCApplication
Class-Path: /usr/share/java/jbzip2.jar /usr/share/java/sam.jar
... checking your other mails
Andreas.
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