I've applied the fix. Updated sources are on ftp. -- Thanks, Kirill Rotmistrovsky
> -----Original Message----- > From: Schuler, Greg (NIH/NLM/NCBI) [E] > Sent: Monday, April 23, 2012 9:50 AM > To: Rotmistrovsky, Kirill (NIH/NLM/NCBI) [C] > Cc: Andreas Tille; Debian Med Project List > Subject: Fwd: RE: Bug#667156: Bug#667156: epcr: ftbfs with GCC-4.7 > > Forwarding to the developer. Thanks for the information. > > -----Original Message----- > From: Andreas Tille [mailto:ti...@debian.org] > Sent: Monday, April 23, 2012 2:09 AM > To: Debian Med Project List > Cc: Schuler, Greg (NIH/NLM/NCBI) [E] > Subject: Re: Bug#667156: Bug#667156: epcr: ftbfs with GCC-4.7 > > Hi again Gregory, > > here you can find a simple patch for the problem described below: > > http://anonscm.debian.org/viewvc/debian-med/trunk/packages/ncbi- > epcr/trunk/debian/patches/gcc-4.7.patch?revision=10524&view=markup > > Feel free to take it over into your next release. > > Kind regards > > Andreas. > > On Wed, Apr 04, 2012 at 01:11:51PM +0900, Charles Plessy wrote: > > Dear Gregory, > > > > Debian distributes epcr, and after a mass-rebuild against GCC 4.7, we > > noticed the following error: > > > > ./epcr/minilcs.hpp:308:9: error: 'memset' was not declared in this > > scope, and no declarations were found by argument-dependent lookup at > > the point of instantiation [-fpermissive] > > > > You can see below for more context, and more in particular the > > instructions under “Name lookup changes” in GCC's 4.7 porting page. > > > > http://gcc.gnu.org/gcc-4.7/porting_to.html > > > > Do you think you can release an updated version of epcr ? > > > > I am sending a copy of this message in our public bug tracker > > (667...@bugs.debian.org). Please feel free to do the same in your answer. > > The archive is available at the following URL. > > > > http://bugs.debian.org/667156 > > > > Have a nice day, > > > > -- Charles Plessy, Debian Med packaging team, Tsurumi, Kanagawa, Japan. > > > > Le Tue, Apr 03, 2012 at 11:08:41PM +0000, Matthias Klose a écrit : > > > Package: epcr > > > Version: 2.3.12-2 > > > Severity: important > > > Tags: sid wheezy > > > User: debian-...@lists.debian.org > > > Usertags: ftbfs-gcc-4.7 > > > > > > The package fails to build in a test rebuild on at least amd64 with > > > gcc-4.7/g++-4.7, but succeeds to build with gcc-4.6/g++-4.6. The > > > severity of this report may be raised before the wheezy release. > > > > > > ./epcr/minilcs.hpp:308:9: error: 'memset' was not declared in this > > > scope, and no declarations were found by argument-dependent lookup > > > at the point of instantiation [-fpermissive] > > > > > > The full build log can be found at: > > > http://people.debian.org/~lucas/logs/2012/03/29-clang-gcc47/unstable > > > -gcc47/epcr_2.3.12-2_unstable-gcc47.log > > > The last lines of the build log are at the end of this report. > > > > > > Some hints on fixing these issues can be found at > > > http://gcc.gnu.org/gcc-4.7/porting_to.html > > > > > > To build with GCC 4.7, either set CC=gcc-4.7 CXX=g++-4.7 explicitly, > > > or install the gcc, g++, gfortran, ... packages from experimental. > > > > > > [...] > > > g++ -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12\" -DVER_MAJOR=2 > > > g++ -DVER_MINOR=3 -DVER_BUILD=12 -DSTANDALONE=1 -c e-PCR_main.cpp -o > > > g++ e-PCR_main.o > > > make[3]: *** No rule to make target `libepcr.a', needed by `e-PCR'. Stop. > > > make[3]: Leaving directory `/??PKGBUILDDIR??' > > > make[3]: Entering directory `/??PKGBUILDDIR??' > > > if test -n "" ; then \ > > > test -L || ln -s . ; \ > > > fi > > > g++ -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12\" -DVER_MAJOR=2 > > > g++ -DVER_MINOR=3 -DVER_BUILD=12 -DSTANDALONE=1 -c famap_main.cpp -o > > > g++ famap_main.o > > > make[3]: *** No rule to make target `libepcr.a', needed by `famap'. Stop. > > > make[3]: Leaving directory `/??PKGBUILDDIR??' > > > make[3]: Entering directory `/??PKGBUILDDIR??' > > > if test -n "" ; then \ > > > test -L || ln -s . ; \ > > > fi > > > g++ -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12\" -DVER_MAJOR=2 > > > g++ -DVER_MINOR=3 -DVER_BUILD=12 -DSTANDALONE=1 -c fahash_main.cpp > > > g++ -o fahash_main.o > > > make[3]: *** No rule to make target `libepcr.a', needed by `fahash'. > > > Stop. > > > make[3]: Leaving directory `/??PKGBUILDDIR??' > > > make[3]: Entering directory `/??PKGBUILDDIR??' > > > if test -n "" ; then \ > > > test -L || ln -s . ; \ > > > fi > > > g++ -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12\" -DVER_MAJOR=2 > > > g++ -DVER_MINOR=3 -DVER_BUILD=12 -DSTANDALONE=1 -c re-PCR_main.cpp > > > g++ -o re-PCR_main.o > > > make[3]: *** No rule to make target `libepcr.a', needed by `re-PCR'. > > > Stop. > > > make[3]: Leaving directory `/??PKGBUILDDIR??' > > > make[2]: *** [all] Error 2 > > > make[1]: *** [override_dh_auto_build] Error 2 > > > make[2]: Leaving directory `/??PKGBUILDDIR??' > > > make[1]: Leaving directory `/??PKGBUILDDIR??' > > > make: *** [build-arch] Error 2 > > > dpkg-buildpackage: error: debian/rules build-arch gave error exit > > > status 2 > > > > > > > > > > > > > > _______________________________________________ > > > Debian-med-packaging mailing list > > > debian-med-packag...@lists.alioth.debian.org > > > http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-p > > > ackaging > > > > > > -- > > Charles Plessy > > Debian Med packaging team, > > http://www.debian.org/devel/debian-med > > Tsurumi, Kanagawa, Japan > > > > > > > > _______________________________________________ > > Debian-med-packaging mailing list > > debian-med-packag...@lists.alioth.debian.org > > http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-pac > > kaging > > -- > http://fam-tille.de
