Hi again Gregory, here you can find a simple patch for the problem described below:
http://anonscm.debian.org/viewvc/debian-med/trunk/packages/ncbi-epcr/trunk/debian/patches/gcc-4.7.patch?revision=10524&view=markup Feel free to take it over into your next release. Kind regards Andreas. On Wed, Apr 04, 2012 at 01:11:51PM +0900, Charles Plessy wrote: > Dear Gregory, > > Debian distributes epcr, and after a mass-rebuild against GCC 4.7, we > noticed the following error: > > ./epcr/minilcs.hpp:308:9: error: 'memset' was not declared in this scope, > and no declarations were found by argument-dependent lookup at the point of > instantiation [-fpermissive] > > You can see below for more context, and more in particular the instructions > under “Name lookup changes” in GCC's 4.7 porting page. > > http://gcc.gnu.org/gcc-4.7/porting_to.html > > Do you think you can release an updated version of epcr ? > > I am sending a copy of this message in our public bug tracker > (667...@bugs.debian.org). Please feel free to do the same in your answer. > The archive is available at the following URL. > > http://bugs.debian.org/667156 > > Have a nice day, > > -- Charles Plessy, Debian Med packaging team, Tsurumi, Kanagawa, Japan. > > Le Tue, Apr 03, 2012 at 11:08:41PM +0000, Matthias Klose a écrit : > > Package: epcr > > Version: 2.3.12-2 > > Severity: important > > Tags: sid wheezy > > User: debian-...@lists.debian.org > > Usertags: ftbfs-gcc-4.7 > > > > The package fails to build in a test rebuild on at least amd64 with > > gcc-4.7/g++-4.7, but succeeds to build with gcc-4.6/g++-4.6. The > > severity of this report may be raised before the wheezy release. > > > > ./epcr/minilcs.hpp:308:9: error: 'memset' was not declared in this scope, > > and no declarations were found by argument-dependent lookup at the point of > > instantiation [-fpermissive] > > > > The full build log can be found at: > > http://people.debian.org/~lucas/logs/2012/03/29-clang-gcc47/unstable-gcc47/epcr_2.3.12-2_unstable-gcc47.log > > The last lines of the build log are at the end of this report. > > > > Some hints on fixing these issues can be found at > > http://gcc.gnu.org/gcc-4.7/porting_to.html > > > > To build with GCC 4.7, either set CC=gcc-4.7 CXX=g++-4.7 explicitly, > > or install the gcc, g++, gfortran, ... packages from experimental. > > > > [...] > > g++ -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12\" -DVER_MAJOR=2 -DVER_MINOR=3 > > -DVER_BUILD=12 -DSTANDALONE=1 -c e-PCR_main.cpp -o e-PCR_main.o > > make[3]: *** No rule to make target `libepcr.a', needed by `e-PCR'. Stop. > > make[3]: Leaving directory `/??PKGBUILDDIR??' > > make[3]: Entering directory `/??PKGBUILDDIR??' > > if test -n "" ; then \ > > test -L || ln -s . ; \ > > fi > > g++ -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12\" -DVER_MAJOR=2 -DVER_MINOR=3 > > -DVER_BUILD=12 -DSTANDALONE=1 -c famap_main.cpp -o famap_main.o > > make[3]: *** No rule to make target `libepcr.a', needed by `famap'. Stop. > > make[3]: Leaving directory `/??PKGBUILDDIR??' > > make[3]: Entering directory `/??PKGBUILDDIR??' > > if test -n "" ; then \ > > test -L || ln -s . ; \ > > fi > > g++ -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12\" -DVER_MAJOR=2 -DVER_MINOR=3 > > -DVER_BUILD=12 -DSTANDALONE=1 -c fahash_main.cpp -o fahash_main.o > > make[3]: *** No rule to make target `libepcr.a', needed by `fahash'. Stop. > > make[3]: Leaving directory `/??PKGBUILDDIR??' > > make[3]: Entering directory `/??PKGBUILDDIR??' > > if test -n "" ; then \ > > test -L || ln -s . ; \ > > fi > > g++ -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12\" -DVER_MAJOR=2 -DVER_MINOR=3 > > -DVER_BUILD=12 -DSTANDALONE=1 -c re-PCR_main.cpp -o re-PCR_main.o > > make[3]: *** No rule to make target `libepcr.a', needed by `re-PCR'. Stop. > > make[3]: Leaving directory `/??PKGBUILDDIR??' > > make[2]: *** [all] Error 2 > > make[1]: *** [override_dh_auto_build] Error 2 > > make[2]: Leaving directory `/??PKGBUILDDIR??' > > make[1]: Leaving directory `/??PKGBUILDDIR??' > > make: *** [build-arch] Error 2 > > dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 > > > > > > > > > _______________________________________________ > > Debian-med-packaging mailing list > > debian-med-packag...@lists.alioth.debian.org > > http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging > > > -- > Charles Plessy > Debian Med packaging team, > http://www.debian.org/devel/debian-med > Tsurumi, Kanagawa, Japan > > > > _______________________________________________ > Debian-med-packaging mailing list > debian-med-packag...@lists.alioth.debian.org > http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20120423060846.gb16...@an3as.eu
