On 08/09/2015 02:02, Vincent Danjean wrote:
> I'm annoyed with the current package: the tests fail when the
> sources are in a directory containing a '+'. And, due to the repack
> and the +dfsg suffix, my sbuilder put the source into a
> «BUILDDIR»/picard-tools-1.138+dfsg.1 directory.
In fact, the bug comes from the main program, at runtime:
vdanjean@atsina:~/picard-tools$
CLASSPATH=/usr/share/java/htsjdk.jar:/usr/share/java/guava.jar:dist/picard.jar
java picard.cmdline.PicardCommandLine FilterVcf -h
USAGE: FilterVcf [options]
[... help text ...]
vdanjean@atsina:~/picard-tools$ cd ..
vdanjean@atsina:~$ mv picard-tools picard-tools+1
vdanjean@atsina:~$ cd picard-tools+1/
vdanjean@atsina:~/picard-tools+1$
CLASSPATH=/usr/share/java/htsjdk.jar:/usr/share/java/guava.jar:dist/picard.jar
java picard.cmdline.PicardCommandLine FilterVcf -h
WARNING 2015-09-08 07:36:07 ClassFinder could not read
entriesjava.io.FileNotFoundException: /home/vdanjean/picard-tools
1/dist/picard.jar (No such file or directory)
USAGE: PicardCommandLine <program name> [-h]
Available Programs:
--------------------------------------------------------------------------------------
'FilterVcf' is not a valid command. See PicardCommandLine --help for more
information.
vdanjean@atsina:~/picard-tools+1$
:-(
I will try to contact upstream.
Regards,
Vincent
--
Vincent Danjean GPG key ID 0xD17897FA vdanj...@debian.org
GPG key fingerprint: 621E 3509 654D D77C 43F5 CA4A F6AE F2AF D178 97FA
Unofficial pkgs: http://moais.imag.fr/membres/vincent.danjean/deb.html
APT repo: deb http://people.debian.org/~vdanjean/debian unstable main
