I don't think I'm very knowledgeable about what you need help with but, just in 
case my question helps you: Have you made gluegen2.jar be in the classpath as 
well?

> Date: Wed, 30 Jan 2013 13:26:30 +0900
> Subject: On JOGL in Debian
> From: mha...@gmail.com
> To: debian-java@lists.debian.org
> 
> Hi,
> 
> I'm now trying to debianize Processing (http://processing.org).   It's
> almost done, but I'm stuck on some issues w.r.t. JOGL.
> 
> Processing uses JOGL, and I want to use Debian-shipped version of JOGL
> (libjogl2-java, which contains /usr/share/java/jogl2.jar).  It gives
> me errors something like:
> 
>     [javac] 
> /home/mhatta/work/Debian/processing/processing-read-only/processing/core/src/processing/opengl/PGL.java:49:
> cannot find symbol
>     [javac] symbol  : class GLFBODrawable
>     [javac] location: package javax.media.opengl
>     [javac] import javax.media.opengl.GLFBODrawable;
>     [javac]                          ^
>     [javac] 
> /home/mhatta/work/Debian/processing/processing-read-only/processing/core/src/processing/opengl/PGL.java:66:
> cannot find symbol
>     [javac] symbol  : class FBObject
>     [javac] location: package com.jogamp.opengl
>     [javac] import com.jogamp.opengl.FBObject;
>     [javac]                         ^
> 
> (snip)
> 
> So apparently FBObject and friends are missing in Debian's jogl2.jar.
> 
> When I use the upstream-shipped version of JOGL (jogl-all.jar), then
> everything goes well.  And if I rename Debian's jogl2.jar to
> jogl-all.jar and replace it, it works fine, too.
> 
> Could you give me a clue?
> 
> Best regards,
> MH
> 
> --
> Masayuki Hatta
> Assistant Professor, Faculty of Economics, Surugadai University, Japan
> mha...@debian.org / mha...@gnu.org / mha...@opensource.jp /
> hatta.masay...@surugadai.ac.jp
> http://about.me/mhatta
> 
> 
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