On 30-07-15 14:03, Sebastiaan Couwenberg wrote: > There are a couple of easy to solve FTBFS that cannot find the hdf5 > library that will need a patch add the HDF5 variant specific library > path. For those issues bugs haven't been filed yet, for all other bugs > related to the netcdf transition see: > > https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=netcdf-split-c-f-cxx;[email protected]
To address the hdf5 linking issues I've patched nc-config & netcdf.pc to include the HDF5 library & include paths as mentiond in the 'HDF5 linking issues with new NetCDF packages' thread [1]. These changes will be included in netcdf (1:4.4.0~rc2-1~exp4) which I haven't uploaded yet, but only use for my rebuilds at the moment. The updated netcdf package allowed the build to succeed for: gnudatalanguage (0.9.5-2) nco (4.5.1-1) octave-octcdf (1.1.8-1) r-cran-ncdf4 (1.13-1) But not for: ncview (2.1.5+ds1-1) netcdf4-python (1.1.8-2) [fails to find mpi.h] For ruby-netcdf (0.7.1.1-1) only a small patch is required to accept the 4.4.0-rc version. The new upstream release has no further issues with the new netcdf packages. > gmt (5.1.2+dfsg1-1) FTBFS because it couldn't find the HDF5 libraries > either, but that was easily solved in gmt (5.1.2+dfsg1-2~exp1). gmt (5.1.2+dfsg1-2~exp1) now FTBFS, the hdf5-mpi.patch is no longer suffient. I don't quite understand this regression. [1] https://lists.debian.org/debian-gis/2015/07/msg00117.html Transition: netcdf libnetcdfc7 (1:4.1.3-7.2) -> libnetcdf7 (1:4.4.0~rc2-1~exp4) libnetcdfc++4 (1:4.1.3-7.2) -> libnetcdf-c++4-1 (4.2.1-1~exp3) [cxx4] libnetcdfc++4 (1:4.1.3-7.2) -> libnetcdf-c++4 (4.2-1~exp3) [legacy] libnetcdff5 (1:4.1.3-7.2) -> libnetcdff6 (4.4.2-1~exp4) The status of the most recent rebuilds is as follows. Entries tagged with [+] build successfully after applying the patch from the bugreport. adios (1.8.0-2 / 1.8.0-3) OK / OK cdftools (3.0-1 / 3.0-2~exp1) FTBFS / OK cmor (2.9.1-5 / 2.9.1-6) OK / OK dx (1:4.4.4-7) OK etsf-io (1.0.3-4 / 1.0.4-1~exp1) OK / OK [+] exodusii (6.02.dfsg.1-5 / 6.02.dfsg.1-6) OK / OK ferret-vis (6.9.3-1 / 6.9.3-2~exp1) FTBFS / OK gdal (1.10.1+dfsg-9 / 1.11.2+dfsg-1~exp4) OK / OK gnudatalanguage (0.9.5-2) OK grace (1:5.1.25-1) OK grads (2:2.0.2-5 / 2:2.0.2-6) OK / OK gri (2.12.23-8) FTBFS kst (2.0.3-4) OK libpdl-netcdf-perl (4.20-1) OK [+] magics++ (2.24.7-3) OK [+] minc (2.2.00-6) OK [+] nco (4.5.1-1) OK ncview (2.1.5+ds1-1) FTBFS netcdf4-python (1.1.8-2 / 1.1.8-3~exp2) FTBFS / OK oasis3 (3.mct+dfsg.121022-3 / 3.mct+dfsg.121022-4) OK / OK [+] octave-octcdf (1.1.8-1) OK ovito (2.3.3+dfsg1-1) OK python-scientific (2.9.4-3) OK r-cran-ncdf4 (1.13-1) OK r-cran-rnetcdf (1.6.3-1-1) OK ruby-netcdf (0.7.1.1-1) OK [+] v-sim (3.7.2-1) OK vtk (5.8.0-17.5 / 5.10.1+dfsg-1) OK / OK [+] cdo (1.6.6+dfsg.1-3 / 1.6.6+dfsg.1-4) OK / OK gmt (5.1.2+dfsg1-1 / 5.1.2+dfsg1-2~exp1) FTBFS / FTBFS metview (4.5.6-3 / 4.5.6-4exp1) OK / OK [+] ncl (6.3.0-3~exp1 / 6.3.0-3) OK / OK vtk6 (6.2.0+dfsg1-1) OK [+] Kind Regards, Bas -- GPG Key ID: 4096R/6750F10AE88D4AF1 Fingerprint: 8182 DE41 7056 408D 6146 50D1 6750 F10A E88D 4AF1 -- To UNSUBSCRIBE, email to [email protected] with a subject of "unsubscribe". Trouble? Contact [email protected] Archive: https://lists.debian.org/[email protected]
