Bug#1100816: marked as done (orange-spectroscopy: FTBFS: AssertionError: Arrays are not almost equal to 4 decimals)

[Debian Bug Tracking System]

Your message dated Fri, 28 Mar 2025 17:34:10 +0000
with message-id <e1tydas-001c61...@fasolo.debian.org>
and subject line Bug#1100816: fixed in orange-spectroscopy 0.8.1+git20250328-1
has caused the Debian Bug report #1100816,
regarding orange-spectroscopy: FTBFS: AssertionError: Arrays are not almost 
equal to 4 decimals
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
1100816: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1100816
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems

--- Begin Message ---

Package: src:orange-spectroscopy
Version: 0.8.1-2
Severity: serious
Tags: ftbfs trixie sid

Dear maintainer:

During a rebuild of all packages in unstable, your package failed to build:

--------------------------------------------------------------------------------
[...]
 debian/rules clean
dh clean --with sphinxdoc --buildsystem=pybuild
   dh_auto_clean -O--buildsystem=pybuild
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
 debian/rules binary
dh binary --with sphinxdoc --buildsystem=pybuild
   dh_update_autotools_config -O--buildsystem=pybuild
   dh_autoreconf -O--buildsystem=pybuild
   dh_auto_configure -O--buildsystem=pybuild
   dh_auto_build -O--buildsystem=pybuild
I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" 
module
I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation 
--wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy  
* Building wheel...

[... snipped ...]

    ret = ret.dtype.type(ret / rcount)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_als.py:
 6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_atm_corr.py:
 10 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_conversion.py:
 3 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_cut.py:
 2 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_despike.py:
 2 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_emsc.py:
 20 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_integrate.py:
 16 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_interpolate.py:
 20 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_me_emsc.py:
 10 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owhyper.py:
 1 warning
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owinterpolate.py:
 2 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owspectra.py:
 1 warning
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owspectralseries.py:
 1 warning
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
 72 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_readers.py:
 1 warning
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_tile_reader.py:
 2 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_xas.py:
 4 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_als.py: 6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_atm_corr.py: 10 
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_conversion.py: 3 
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_cut.py: 2 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_despike.py: 2 
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_emsc.py: 20 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_integrate.py: 16 
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_interpolate.py: 20 
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_me_emsc.py: 10 
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owhyper.py: 1 
warning
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owinterpolate.py: 2 
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owspectra.py: 1 
warning
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owspectralseries.py:
 1 warning
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 72 
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_readers.py: 1 
warning
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_tile_reader.py: 2 
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_xas.py: 4 warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52:
 UserWarning: _InterpolateCommon should define __eq__ and __hash__ to be used 
for compute_shared
    super().__init__(commonfn)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_atm_corr.py:
 42 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_editor_atm_corr.py:
 9 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py:
 4 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_atm_corr.py: 42 
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_editor_atm_corr.py: 
10 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 4 
warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52:
 UserWarning: _AtmCorr should define __eq__ and __hash__ to be used for 
compute_shared
    super().__init__(commonfn)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_atm_corr.py:
 42 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_editor_atm_corr.py:
 9 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py:
 4 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_atm_corr.py: 42 
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_editor_atm_corr.py: 
10 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 4 
warnings
  /usr/lib/python3/dist-packages/Orange/data/variable.py:546: UserWarning: 
SelectColumn should define __eq__ and __hash__ to be used for compute_value
  or set InheritEq = True if inherited methods suffice
    var = type(self)(name=name or self.name,

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_atm_corr.py:
 7 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_atm_corr.py: 7 
warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/atm_corr.py:102:
 RuntimeWarning: invalid value encountered in divide
    az = az**3 / az2sum

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_conversion.py:
 2 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py:
 9 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
 10 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_tile_reader.py:
 2 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_conversion.py: 2 
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 9 
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 10 
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_tile_reader.py: 2 
warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52:
 UserWarning: _SavitzkyGolayCommon should define __eq__ and __hash__ to be used 
for compute_shared
    super().__init__(commonfn)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_despike.py:
 11 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_editor_spikeremoval.py:
 10 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py:
 7 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_despike.py: 11 
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_editor_spikeremoval.py:
 9 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 7 
warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52:
 UserWarning: _DespikeCommon should define __eq__ and __hash__ to be used for 
compute_shared
    super().__init__(commonfn)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_despike.py::TestSpikeRemoval::test_spikes
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_despike.py::TestSpikeRemoval::test_spikes
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/__init__.py:874:
 RuntimeWarning: Mean of empty slice
    row_out[i] = np.nanmean(row_in[w2])

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_editor_baseline.py:
 1 warning
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
 11 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_editor_baseline.py: 
1 warning
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 11 
warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52:
 UserWarning: _RubberbandBaselineCommon should define __eq__ and __hash__ to be 
used for compute_shared
    super().__init__(commonfn)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_editor_emsc.py:
 6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_emsc.py:
 87 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py:
 4 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_editor_emsc.py: 6 
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_emsc.py: 87 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 4 
warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52:
 UserWarning: _EMSC should define __eq__ and __hash__ to be used for 
compute_shared
    super().__init__(commonfn)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_editor_gaussian.py:
 10 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py:
 7 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
 10 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_tile_reader.py:
 2 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_editor_gaussian.py: 
11 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 7 
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 10 
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_tile_reader.py: 2 
warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52:
 UserWarning: _GaussianCommon should define __eq__ and __hash__ to be used for 
compute_shared
    super().__init__(commonfn)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_editor_me_emsc.py:
 27 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_me_emsc.py:
 68 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py:
 6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_editor_me_emsc.py: 
26 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_me_emsc.py: 68 
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 6 
warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52:
 UserWarning: _ME_EMSC should define __eq__ and __hash__ to be used for 
compute_shared
    super().__init__(commonfn)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_editor_normalize.py:
 26 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py:
 10 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
 37 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_editor_normalize.py:
 27 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 10 
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 37 
warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52:
 UserWarning: _NormalizeCommon should define __eq__ and __hash__ to be used for 
compute_shared
    super().__init__(commonfn)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_editor_normalize.py:
 2 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
 42 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_editor_normalize.py:
 2 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 42 
warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52:
 UserWarning: _NormalizeReferenceCommon should define __eq__ and __hash__ to be 
used for compute_shared
    super().__init__(commonfn)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_emsc.py:
 12 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_emsc.py: 12 warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/emsc.py:140:
 RuntimeWarning: invalid value encountered in divide
    corrected = corrected/m[self.order+1+n_badspec]

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_integrate.py:
 72 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owhyper.py:
 47 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owintegrate.py:
 19 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpeakfit.py:
 1 warning
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py:
 7 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
 13 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_tile_reader.py:
 2 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_integrate.py: 72 
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owhyper.py: 47 
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owintegrate.py: 18 
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpeakfit.py: 1 
warning
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 7 
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 13 
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_tile_reader.py: 2 
warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/integrate.py:28:
 UserWarning: _IntegrateCommon should define __eq__ and __hash__ to be used for 
compute_shared
    super().__init__(commonfn)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_integrate.py:
 104 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owhyper.py:
 6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owintegrate.py:
 46 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpeakfit.py:
 1 warning
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py:
 8 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
 3 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_tile_reader.py:
 12 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_integrate.py: 104 
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owhyper.py: 6 
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owintegrate.py: 44 
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpeakfit.py: 1 
warning
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 8 
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 3 
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_tile_reader.py: 12 
warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/integrate.py:105:
 DeprecationWarning: `trapz` is deprecated. Use `trapezoid` instead, or one of 
the numerical integration functions in `scipy.integrate`.
    return np.trapz(y_s, x, axis=1)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_integrate.py:
 5 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owhyper.py:
 2 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owintegrate.py:
 11 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_integrate.py: 5 
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owhyper.py: 2 
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owintegrate.py: 11 
warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/integrate.py:147:
 DeprecationWarning: `trapz` is deprecated. Use `trapezoid` instead, or one of 
the numerical integration functions in `scipy.integrate`.
    return np.trapz(y_s, x_s, axis=1)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_irfft.py::TestIRFFT::test_agilent_fft_ab
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_irfft.py:97:
 RuntimeWarning: invalid value encountered in log10
    ab = np.log10(rsc / ssc)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_irfft.py::TestIRFFT::test_multi_ab
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_irfft.py:134:
 RuntimeWarning: invalid value encountered in log10
    ab = np.log10(rsc / ssc)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_me_emsc.py:
 6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_me_emsc.py: 6 
warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/me_emsc.py:142:
 RuntimeWarning: invalid value encountered in divide
    corrected = corrected / m[1 + self.ncomp]

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owalignstack.py::test_image
  /usr/lib/python3/dist-packages/_pytest/python.py:163: 
PytestReturnNotNoneWarning: Expected None, but 
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owalignstack.py::test_image
 returned array([[0., 1., 0., 0., 0., 0., 1.],
         [0., 0., 5., 0., 0., 0., 1.],
         [0., 0., 0., 3., 0., 0., 1.],
         [0., 0., 0., 0., 1., 0., 1.],
         [0., 0., 0., 0., 0., 1., 1.]]), which will be an error in a future 
version of pytest.  Did you mean to use `assert` instead of `return`?
    warnings.warn(

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owcos.py::TestOWCOS::test_calc_cos
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owcos.py::TestOWCOS::test_calc_cos
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/widgets/owcos.py:48:
 RuntimeWarning: divide by zero encountered in divide
    hn = np.where(i != j, 1 / (np.pi * (j - i)), 0)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owfft.py::TestOWFFT::test_calculation
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owfft.py:111:
 RuntimeWarning: invalid value encountered in log10
    calc_abs = np.log10(rsc.X / ssc.X)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owhyper.py::TestReadCoordinates::test_index_nan
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owhyper.py::TestOWHyper::test_strange
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owhyper.py::TestOWHyper::test_unknown_values_axes
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owhyper.py::TestReadCoordinates::test_index_nan
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owhyper.py::TestOWHyper::test_strange
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owhyper.py::TestOWHyper::test_unknown_values_axes
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/utils/__init__.py:68:
 RuntimeWarning: invalid value encountered in cast
    return np.round(positions).astype(int), np.isnan(positions)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owhyper.py:
 6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owhyper.py: 6 
warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/widgets/owhyper.py:652:
 RuntimeWarning: Mean of empty slice
    np.nanmean(col_df.iloc[i:i+bin_sz,j:j+bin_sz].to_numpy())

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpeakfit.py:
 14 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpeakfit.py: 14 
warnings
  /usr/lib/python3/dist-packages/lmfit/jsonutils.py:30: DeprecationWarning: 
Please import `gaussian` from the `scipy.signal.windows` namespace; the 
`scipy.signal.windows.windows` namespace is deprecated and will be removed in 
SciPy 2.0.0.
    t = getattr(module, oname, None)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpeakfit.py:
 32 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpolar.py:
 10 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpeakfit.py: 32 
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpolar.py: 10 
warnings
  /usr/lib/python3.13/multiprocessing/popen_fork.py:67: DeprecationWarning: 
This process (pid=10578) is multi-threaded, use of fork() may lead to deadlocks 
in the child.
    self.pid = os.fork()

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpeakfit.py::TestOWPeakFit::test_allint_indv
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpeakfit.py::TestOWPeakFit::test_allint_indv
  /usr/lib/python3/dist-packages/asteval/asteval.py:922: RuntimeWarning: 
overflow encountered in exp
    out = func(*args, **keywords)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpeakfit.py::TestOWPeakFit::test_allint_indv
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpeakfit.py::TestOWPeakFit::test_allint_indv
  /usr/lib/python3/dist-packages/asteval/astutils.py:263: RuntimeWarning: 
invalid value encountered in scalar subtract
    ast.Sub: lambda a, b: a - b,

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpeakfit.py:
 15 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpeakfit.py: 15 
warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/widgets/peakfit_compute.py:30:
 DeprecationWarning: `trapz` is deprecated. Use `trapezoid` instead, or one of 
the numerical integration functions in `scipy.integrate`.
    output[col] = np.trapz(np.broadcast_to(comps[comp.prefix], x.shape), 
sorted_x)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpls.py:
 22 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpls.py: 22 
warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/models/pls.py:49:
 UserWarning: _PLSCommonTransform should define __eq__ and __hash__ to be used 
for compute_shared
    super().__init__(transform)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpls.py:
 22 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpls.py: 22 
warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/models/pls.py:85:
 UserWarning: PLSProjector should define __eq__ and __hash__ to be used for 
compute_value
  or set InheritEq = True if inherited methods suffice
    return ContinuousVariable(name, compute_value=PLSProjector(transformer, i))

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpls.py:
 19 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpls.py: 19 
warnings
  /usr/lib/python3/dist-packages/orangewidget/gui.py:2073: UserWarning: 
decorate OWPLS.apply with @gui.deferred and then explicitly call apply.now or 
apply.deferred.
    warnings.warn(

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpolar.py:
 12 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpolar.py: 12 
warnings
  /usr/lib/python3/dist-packages/orangewidget/utils/listview.py:119: 
DeprecationWarning: ListViewSearch is deprecated and will be removed in 
upcoming releases. Use ListViewFilter instead.
    warnings.warn(("ListViewSearch is deprecated and will be removed " + "in 
upcoming releases. Use ListViewFilter instead."),

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py:
 6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
 9 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 6 
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 9 
warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52:
 UserWarning: _PCAReconstructCommon should define __eq__ and __hash__ to be 
used for compute_shared
    super().__init__(commonfn)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py:
 7 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
 52 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_tile_reader.py:
 2 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 7 
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 52 
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_tile_reader.py: 2 
warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52:
 UserWarning: _TransmittanceCommon should define __eq__ and __hash__ to be used 
for compute_shared
    super().__init__(commonfn)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py:
 7 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
 10 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 7 
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 10 
warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52:
 UserWarning: _ShiftAndScaleCommon should define __eq__ and __hash__ to be used 
for compute_shared
    super().__init__(commonfn)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py:
 6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
 6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 6 
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 6 
warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52:
 UserWarning: _MNFCommon should define __eq__ and __hash__ to be used for 
compute_shared
    super().__init__(commonfn)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py:
 7 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_xas.py:
 18 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 7 
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_xas.py: 18 warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52:
 UserWarning: _XASnormalizationCommon should define __eq__ and __hash__ to be 
used for compute_shared
    super().__init__(commonfn)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py:
 4 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_xas.py:
 11 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 4 
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_xas.py: 11 warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52:
 UserWarning: _ExtractEXAFSCommon should define __eq__ and __hash__ to be used 
for compute_shared
    super().__init__(commonfn)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py::TestAllPreprocessors::test_allpreproc_indv_empty
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestPCADenoising::test_no_samples
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestMNFDenoising::test_no_samples
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py::TestAllPreprocessors::test_allpreproc_indv_empty
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestPCADenoising::test_no_samples
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestMNFDenoising::test_no_samples
  /usr/lib/python3/dist-packages/Orange/data/table.py:219: UserWarning: <class 
'numpy.ndarray'> must return a column, not 2d array
    warnings.warn(err)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py::TestAllPreprocessors::test_allpreproc_indv_empty
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py::TestAllPreprocessors::test_allpreproc_indv_empty
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/widgets/preprocessors/atm_corr.py:108:
 RuntimeWarning: All-NaN slice encountered
    self.preview_data_max = np.nanmax(spectra_mean(data.X))

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owspectralseries.py:
 14 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owspectralseries.py:
 14 warnings
  /usr/lib/python3/dist-packages/Orange/widgets/gui.py:483: DeprecationWarning: 
Argument 'valueType' is deprecated and ignored
    warnings.warn("Argument 'valueType' is deprecated and ignored",

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
 42 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 42 
warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52:
 UserWarning: _SpSubtractCommon should define __eq__ and __hash__ to be used 
for compute_shared
    super().__init__(commonfn)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
 5 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 5 
warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/transform.py:97:
 RuntimeWarning: divide by zero encountered in divide
    transd = data.X / ref_X

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestTransmittance::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestTransmittance::test_no_infs
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/transform.py:97:
 RuntimeWarning: invalid value encountered in divide
    transd = data.X / ref_X

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
 51 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_tile_reader.py:
 2 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 51 
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_tile_reader.py: 2 
warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52:
 UserWarning: _AbsorbanceCommon should define __eq__ and __hash__ to be used 
for compute_shared
    super().__init__(commonfn)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
 5 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 5 
warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/transform.py:33:
 RuntimeWarning: divide by zero encountered in log10
    np.log10(absd, absd)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestAbsorbance::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestAbsorbance::test_no_infs
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/transform.py:38:
 RuntimeWarning: divide by zero encountered in log10
    absd = np.log10(data.X)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
 6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 6 
warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/transform.py:32:
 RuntimeWarning: divide by zero encountered in divide
    absd = ref_X / data.X

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestAbsorbance::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestAbsorbance::test_no_infs
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/transform.py:32:
 RuntimeWarning: invalid value encountered in divide
    absd = ref_X / data.X

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestNormalize::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestNormalize::test_no_infs
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/__init__.py:402:
 RuntimeWarning: invalid value encountered in divide
    data.X /= norm_data.X

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestNormalize::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestNormalize::test_no_infs
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/__init__.py:420:
 RuntimeWarning: invalid value encountered in divide
    data.X = data.X / (max - min)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
 5 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 5 
warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/__init__.py:462:
 RuntimeWarning: divide by zero encountered in divide
    return replace_infs(data.X / ref_X)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
 42 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 42 
warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52:
 UserWarning: _NormalizePhaseReferenceCommon should define __eq__ and __hash__ 
to be used for compute_shared
    super().__init__(commonfn)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestNormalizeReference::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestNormalizeReference::test_no_infs
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/__init__.py:462:
 RuntimeWarning: invalid value encountered in divide
    return replace_infs(data.X / ref_X)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_readers.py::TestOmnicMapReader::test_read
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_readers.py::TestOmnicMapReader::test_read
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/utils/pymca5/OmnicMap.py:148:
 RuntimeWarning: invalid value encountered in scalar divide
    deltaY = (yPositions[-1] - yPositions[0]) / (self.__nFiles - 1)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_tile_reader.py:
 5 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_tile_reader.py: 5 
warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/widgets/owtilefile.py:121:
 DeprecationWarning: 'addSpace' has been deprecated. Use gui.separator instead.
    vbox = gui.radioButtons(None, self, "source", box=True, addSpace=True,

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_xas.py::TestXASnormalization::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_xas.py::TestXASnormalization::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_xas.py::TestXASnormalization::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_xas.py::TestXASnormalization::test_no_infs
  /usr/lib/python3/dist-packages/extranormal3/normal_xas.py:83: RuntimeWarning: 
invalid value encountered in divide
    return 
numpy.array((spectrum[1]-preedge_fitcurve[1]-flattening)/norm_const), norm_const

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_xas.py::TestExtractEXAFS::test_file
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_xas.py::TestExtractEXAFS::test_file
  /usr/lib/python3/dist-packages/extranormal3/extra_exafs.py:96: 
RuntimeWarning: divide by zero encountered in divide
    sigma=1./k_interp**kweight

.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_irfft.py::TestIRFFT::test_agilent_fft_ab
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_irfft.py:97:
 RuntimeWarning: invalid value encountered in log10
    ab = np.log10(rsc / ssc)

.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_irfft.py::TestIRFFT::test_multi_ab
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_irfft.py:134:
 RuntimeWarning: invalid value encountered in log10
    ab = np.log10(rsc / ssc)

.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owalignstack.py::test_image
  /usr/lib/python3/dist-packages/_pytest/python.py:163: 
PytestReturnNotNoneWarning: Expected None, but 
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owalignstack.py::test_image
 returned array([[0., 1., 0., 0., 0., 0., 1.],
         [0., 0., 5., 0., 0., 0., 1.],
         [0., 0., 0., 3., 0., 0., 1.],
         [0., 0., 0., 0., 1., 0., 1.],
         [0., 0., 0., 0., 0., 1., 1.]]), which will be an error in a future 
version of pytest.  Did you mean to use `assert` instead of `return`?
    warnings.warn(

.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owfft.py::TestOWFFT::test_calculation
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owfft.py:111:
 RuntimeWarning: invalid value encountered in log10
    calc_abs = np.log10(rsc.X / ssc.X)

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
=========================== short test summary info ============================
FAILED 
orangecontrib/spectroscopy/tests/test_xas.py::TestExtractEXAFS::test_file - 
AssertionError: 
Arrays are not almost equal to 4 decimals

Mismatched elements: 8 / 8 (100%)
Max absolute difference among violations: 0.00066078
Max relative difference among violations: 0.00191092
 ACTUAL: array([-0.3465, -0.3459, -0.3444, -0.3419, -0.3386, -0.3344, -0.3294,
       -0.3237])
 DESIRED: array([-0.3458, -0.3453, -0.3438, -0.3414, -0.3381, -0.3339, -0.329 ,
       -0.3233])
FAILED tests/test_xas.py::TestExtractEXAFS::test_file - AssertionError: 
Arrays are not almost equal to 4 decimals

Mismatched elements: 8 / 8 (100%)
Max absolute difference among violations: 0.00066078
Max relative difference among violations: 0.00191092
 ACTUAL: array([-0.3465, -0.3459, -0.3444, -0.3419, -0.3386, -0.3344, -0.3294,
       -0.3237])
 DESIRED: array([-0.3458, -0.3453, -0.3438, -0.3414, -0.3381, -0.3339, -0.329 ,
       -0.3233])
= 2 failed, 1520 passed, 378 skipped, 192 deselected, 3345 warnings in 162.79s 
(0:02:42) =
Widgets left: 0    Max widgets: 24167 

E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=1: cd 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build; python3.13 
-m pytest --verbosity=2 -k "not Mixin"
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.13 
returned exit code 13
make: *** [debian/rules:7: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------

The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:

https://people.debian.org/~sanvila/build-logs/202503/

About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.

If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.

If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:orange-spectroscopy, so that this is still
visible in the BTS web page for this package.

Thanks.

--- End Message ---

--- Begin Message ---

Source: orange-spectroscopy
Source-Version: 0.8.1+git20250328-1
Done: Roland Mas <lola...@debian.org>

We believe that the bug you reported is fixed in the latest version of
orange-spectroscopy, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1100...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Roland Mas <lola...@debian.org> (supplier of updated orange-spectroscopy 
package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Fri, 28 Mar 2025 17:57:47 +0100
Source: orange-spectroscopy
Architecture: source
Version: 0.8.1+git20250328-1
Distribution: unstable
Urgency: medium
Maintainer: Debian PaN Maintainers 
<debian-pan-maintain...@alioth-lists.debian.net>
Changed-By: Roland Mas <lola...@debian.org>
Closes: 1100816
Changes:
 orange-spectroscopy (0.8.1+git20250328-1) unstable; urgency=medium
 .
   * New upstream snapshot
   * Tighten versioned dependency on python3-lmfit
   * These two actions fix: "FTBFS: AssertionError: Arrays are not almost
     equal to 4 decimals", thanks to Santiago Vila (Closes: #1100816).
Checksums-Sha1:
 b6ef351eda88f6250dda01dae527e989516f126e 3274 
orange-spectroscopy_0.8.1+git20250328-1.dsc
 2e493d12ccf67ffff3cf9bcfdfc0d9a144f0d9d0 4298431 
orange-spectroscopy_0.8.1+git20250328.orig.tar.gz
 59ff7c658d7b0a37d660ca12fa3562cbde85c00d 4884 
orange-spectroscopy_0.8.1+git20250328-1.debian.tar.xz
 5ebab8d2f5329b1197153577ff2918d504a3fe42 18756 
orange-spectroscopy_0.8.1+git20250328-1_amd64.buildinfo
Checksums-Sha256:
 a921ac2826d2f54340fb65dce284054ad05a932eae0a2ab00177d4e9f075ec60 3274 
orange-spectroscopy_0.8.1+git20250328-1.dsc
 6cd0de89d4f29abf2eaa892b4e5883e8036217edae1e9d0c54bd3e6cd408c3e3 4298431 
orange-spectroscopy_0.8.1+git20250328.orig.tar.gz
 d2782ee4e98ed7d1e945e4da6202ebedd2f555ea8780b0aad6bd6b6a207bf0d2 4884 
orange-spectroscopy_0.8.1+git20250328-1.debian.tar.xz
 474c0da48bc4c05daa4ca5ecf220d486a95c58ccfdebd6e4eaefc1c2a2226597 18756 
orange-spectroscopy_0.8.1+git20250328-1_amd64.buildinfo
Files:
 ba25e954dd14a4907d00f6fe09d90758 3274 python optional 
orange-spectroscopy_0.8.1+git20250328-1.dsc
 d297339e861e7ea832115367d3ce14dd 4298431 python optional 
orange-spectroscopy_0.8.1+git20250328.orig.tar.gz
 fe8b8d50b0ca1cf783c869afe777013a 4884 python optional 
orange-spectroscopy_0.8.1+git20250328-1.debian.tar.xz
 38e992c725f00cada2258c91c750295e 18756 python optional 
orange-spectroscopy_0.8.1+git20250328-1_amd64.buildinfo

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