Package: src:orange-spectroscopy
Version: 0.8.1-2
Severity: serious
Tags: ftbfs trixie sid
Dear maintainer:
During a rebuild of all packages in unstable, your package failed to build:
--------------------------------------------------------------------------------
[...]
debian/rules clean
dh clean --with sphinxdoc --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary
dh binary --with sphinxdoc --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
dh_auto_build -O--buildsystem=pybuild
I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build"
module
I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation
--wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy
* Building wheel...
[... snipped ...]
ret = ret.dtype.type(ret / rcount)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_als.py:
6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_atm_corr.py:
10 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_conversion.py:
3 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_cut.py:
2 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_despike.py:
2 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_emsc.py:
20 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_integrate.py:
16 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_interpolate.py:
20 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_me_emsc.py:
10 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owhyper.py:
1 warning
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owinterpolate.py:
2 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owspectra.py:
1 warning
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owspectralseries.py:
1 warning
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
72 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_readers.py:
1 warning
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_tile_reader.py:
2 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_xas.py:
4 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_als.py: 6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_atm_corr.py: 10
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_conversion.py: 3
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_cut.py: 2 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_despike.py: 2
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_emsc.py: 20 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_integrate.py: 16
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_interpolate.py: 20
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_me_emsc.py: 10
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owhyper.py: 1
warning
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owinterpolate.py: 2
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owspectra.py: 1
warning
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owspectralseries.py:
1 warning
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 72
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_readers.py: 1
warning
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_tile_reader.py: 2
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_xas.py: 4 warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52:
UserWarning: _InterpolateCommon should define __eq__ and __hash__ to be used
for compute_shared
super().__init__(commonfn)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_atm_corr.py:
42 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_editor_atm_corr.py:
9 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py:
4 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_atm_corr.py: 42
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_editor_atm_corr.py:
10 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 4
warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52:
UserWarning: _AtmCorr should define __eq__ and __hash__ to be used for
compute_shared
super().__init__(commonfn)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_atm_corr.py:
42 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_editor_atm_corr.py:
9 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py:
4 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_atm_corr.py: 42
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_editor_atm_corr.py:
10 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 4
warnings
/usr/lib/python3/dist-packages/Orange/data/variable.py:546: UserWarning:
SelectColumn should define __eq__ and __hash__ to be used for compute_value
or set InheritEq = True if inherited methods suffice
var = type(self)(name=name or self.name,
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_atm_corr.py:
7 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_atm_corr.py: 7
warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/atm_corr.py:102:
RuntimeWarning: invalid value encountered in divide
az = az**3 / az2sum
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_conversion.py:
2 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py:
9 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
10 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_tile_reader.py:
2 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_conversion.py: 2
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 9
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 10
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_tile_reader.py: 2
warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52:
UserWarning: _SavitzkyGolayCommon should define __eq__ and __hash__ to be used
for compute_shared
super().__init__(commonfn)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_despike.py:
11 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_editor_spikeremoval.py:
10 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py:
7 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_despike.py: 11
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_editor_spikeremoval.py:
9 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 7
warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52:
UserWarning: _DespikeCommon should define __eq__ and __hash__ to be used for
compute_shared
super().__init__(commonfn)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_despike.py::TestSpikeRemoval::test_spikes
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_despike.py::TestSpikeRemoval::test_spikes
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/__init__.py:874:
RuntimeWarning: Mean of empty slice
row_out[i] = np.nanmean(row_in[w2])
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_editor_baseline.py:
1 warning
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
11 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_editor_baseline.py:
1 warning
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 11
warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52:
UserWarning: _RubberbandBaselineCommon should define __eq__ and __hash__ to be
used for compute_shared
super().__init__(commonfn)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_editor_emsc.py:
6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_emsc.py:
87 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py:
4 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_editor_emsc.py: 6
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_emsc.py: 87 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 4
warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52:
UserWarning: _EMSC should define __eq__ and __hash__ to be used for
compute_shared
super().__init__(commonfn)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_editor_gaussian.py:
10 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py:
7 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
10 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_tile_reader.py:
2 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_editor_gaussian.py:
11 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 7
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 10
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_tile_reader.py: 2
warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52:
UserWarning: _GaussianCommon should define __eq__ and __hash__ to be used for
compute_shared
super().__init__(commonfn)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_editor_me_emsc.py:
27 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_me_emsc.py:
68 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py:
6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_editor_me_emsc.py:
26 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_me_emsc.py: 68
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 6
warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52:
UserWarning: _ME_EMSC should define __eq__ and __hash__ to be used for
compute_shared
super().__init__(commonfn)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_editor_normalize.py:
26 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py:
10 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
37 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_editor_normalize.py:
27 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 10
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 37
warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52:
UserWarning: _NormalizeCommon should define __eq__ and __hash__ to be used for
compute_shared
super().__init__(commonfn)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_editor_normalize.py:
2 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
42 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_editor_normalize.py:
2 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 42
warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52:
UserWarning: _NormalizeReferenceCommon should define __eq__ and __hash__ to be
used for compute_shared
super().__init__(commonfn)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_emsc.py:
12 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_emsc.py: 12 warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/emsc.py:140:
RuntimeWarning: invalid value encountered in divide
corrected = corrected/m[self.order+1+n_badspec]
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_integrate.py:
72 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owhyper.py:
47 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owintegrate.py:
19 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpeakfit.py:
1 warning
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py:
7 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
13 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_tile_reader.py:
2 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_integrate.py: 72
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owhyper.py: 47
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owintegrate.py: 18
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpeakfit.py: 1
warning
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 7
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 13
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_tile_reader.py: 2
warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/integrate.py:28:
UserWarning: _IntegrateCommon should define __eq__ and __hash__ to be used for
compute_shared
super().__init__(commonfn)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_integrate.py:
104 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owhyper.py:
6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owintegrate.py:
46 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpeakfit.py:
1 warning
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py:
8 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
3 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_tile_reader.py:
12 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_integrate.py: 104
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owhyper.py: 6
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owintegrate.py: 44
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpeakfit.py: 1
warning
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 8
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 3
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_tile_reader.py: 12
warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/integrate.py:105:
DeprecationWarning: `trapz` is deprecated. Use `trapezoid` instead, or one of
the numerical integration functions in `scipy.integrate`.
return np.trapz(y_s, x, axis=1)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_integrate.py:
5 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owhyper.py:
2 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owintegrate.py:
11 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_integrate.py: 5
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owhyper.py: 2
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owintegrate.py: 11
warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/integrate.py:147:
DeprecationWarning: `trapz` is deprecated. Use `trapezoid` instead, or one of
the numerical integration functions in `scipy.integrate`.
return np.trapz(y_s, x_s, axis=1)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_irfft.py::TestIRFFT::test_agilent_fft_ab
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_irfft.py:97:
RuntimeWarning: invalid value encountered in log10
ab = np.log10(rsc / ssc)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_irfft.py::TestIRFFT::test_multi_ab
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_irfft.py:134:
RuntimeWarning: invalid value encountered in log10
ab = np.log10(rsc / ssc)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_me_emsc.py:
6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_me_emsc.py: 6
warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/me_emsc.py:142:
RuntimeWarning: invalid value encountered in divide
corrected = corrected / m[1 + self.ncomp]
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owalignstack.py::test_image
/usr/lib/python3/dist-packages/_pytest/python.py:163:
PytestReturnNotNoneWarning: Expected None, but
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owalignstack.py::test_image
returned array([[0., 1., 0., 0., 0., 0., 1.],
[0., 0., 5., 0., 0., 0., 1.],
[0., 0., 0., 3., 0., 0., 1.],
[0., 0., 0., 0., 1., 0., 1.],
[0., 0., 0., 0., 0., 1., 1.]]), which will be an error in a future
version of pytest. Did you mean to use `assert` instead of `return`?
warnings.warn(
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owcos.py::TestOWCOS::test_calc_cos
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owcos.py::TestOWCOS::test_calc_cos
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/widgets/owcos.py:48:
RuntimeWarning: divide by zero encountered in divide
hn = np.where(i != j, 1 / (np.pi * (j - i)), 0)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owfft.py::TestOWFFT::test_calculation
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owfft.py:111:
RuntimeWarning: invalid value encountered in log10
calc_abs = np.log10(rsc.X / ssc.X)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owhyper.py::TestReadCoordinates::test_index_nan
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owhyper.py::TestOWHyper::test_strange
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owhyper.py::TestOWHyper::test_unknown_values_axes
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owhyper.py::TestReadCoordinates::test_index_nan
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owhyper.py::TestOWHyper::test_strange
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owhyper.py::TestOWHyper::test_unknown_values_axes
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/utils/__init__.py:68:
RuntimeWarning: invalid value encountered in cast
return np.round(positions).astype(int), np.isnan(positions)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owhyper.py:
6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owhyper.py: 6
warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/widgets/owhyper.py:652:
RuntimeWarning: Mean of empty slice
np.nanmean(col_df.iloc[i:i+bin_sz,j:j+bin_sz].to_numpy())
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpeakfit.py:
14 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpeakfit.py: 14
warnings
/usr/lib/python3/dist-packages/lmfit/jsonutils.py:30: DeprecationWarning:
Please import `gaussian` from the `scipy.signal.windows` namespace; the
`scipy.signal.windows.windows` namespace is deprecated and will be removed in
SciPy 2.0.0.
t = getattr(module, oname, None)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpeakfit.py:
32 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpolar.py:
10 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpeakfit.py: 32
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpolar.py: 10
warnings
/usr/lib/python3.13/multiprocessing/popen_fork.py:67: DeprecationWarning:
This process (pid=10578) is multi-threaded, use of fork() may lead to deadlocks
in the child.
self.pid = os.fork()
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpeakfit.py::TestOWPeakFit::test_allint_indv
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpeakfit.py::TestOWPeakFit::test_allint_indv
/usr/lib/python3/dist-packages/asteval/asteval.py:922: RuntimeWarning:
overflow encountered in exp
out = func(*args, **keywords)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpeakfit.py::TestOWPeakFit::test_allint_indv
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpeakfit.py::TestOWPeakFit::test_allint_indv
/usr/lib/python3/dist-packages/asteval/astutils.py:263: RuntimeWarning:
invalid value encountered in scalar subtract
ast.Sub: lambda a, b: a - b,
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpeakfit.py:
15 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpeakfit.py: 15
warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/widgets/peakfit_compute.py:30:
DeprecationWarning: `trapz` is deprecated. Use `trapezoid` instead, or one of
the numerical integration functions in `scipy.integrate`.
output[col] = np.trapz(np.broadcast_to(comps[comp.prefix], x.shape),
sorted_x)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpls.py:
22 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpls.py: 22
warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/models/pls.py:49:
UserWarning: _PLSCommonTransform should define __eq__ and __hash__ to be used
for compute_shared
super().__init__(transform)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpls.py:
22 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpls.py: 22
warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/models/pls.py:85:
UserWarning: PLSProjector should define __eq__ and __hash__ to be used for
compute_value
or set InheritEq = True if inherited methods suffice
return ContinuousVariable(name, compute_value=PLSProjector(transformer, i))
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpls.py:
19 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpls.py: 19
warnings
/usr/lib/python3/dist-packages/orangewidget/gui.py:2073: UserWarning:
decorate OWPLS.apply with @gui.deferred and then explicitly call apply.now or
apply.deferred.
warnings.warn(
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpolar.py:
12 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpolar.py: 12
warnings
/usr/lib/python3/dist-packages/orangewidget/utils/listview.py:119:
DeprecationWarning: ListViewSearch is deprecated and will be removed in
upcoming releases. Use ListViewFilter instead.
warnings.warn(("ListViewSearch is deprecated and will be removed " + "in
upcoming releases. Use ListViewFilter instead."),
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py:
6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
9 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 6
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 9
warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52:
UserWarning: _PCAReconstructCommon should define __eq__ and __hash__ to be
used for compute_shared
super().__init__(commonfn)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py:
7 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
52 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_tile_reader.py:
2 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 7
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 52
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_tile_reader.py: 2
warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52:
UserWarning: _TransmittanceCommon should define __eq__ and __hash__ to be used
for compute_shared
super().__init__(commonfn)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py:
7 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
10 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 7
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 10
warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52:
UserWarning: _ShiftAndScaleCommon should define __eq__ and __hash__ to be used
for compute_shared
super().__init__(commonfn)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py:
6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 6
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 6
warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52:
UserWarning: _MNFCommon should define __eq__ and __hash__ to be used for
compute_shared
super().__init__(commonfn)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py:
7 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_xas.py:
18 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 7
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_xas.py: 18 warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52:
UserWarning: _XASnormalizationCommon should define __eq__ and __hash__ to be
used for compute_shared
super().__init__(commonfn)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py:
4 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_xas.py:
11 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 4
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_xas.py: 11 warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52:
UserWarning: _ExtractEXAFSCommon should define __eq__ and __hash__ to be used
for compute_shared
super().__init__(commonfn)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py::TestAllPreprocessors::test_allpreproc_indv_empty
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestPCADenoising::test_no_samples
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestMNFDenoising::test_no_samples
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py::TestAllPreprocessors::test_allpreproc_indv_empty
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestPCADenoising::test_no_samples
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestMNFDenoising::test_no_samples
/usr/lib/python3/dist-packages/Orange/data/table.py:219: UserWarning: <class
'numpy.ndarray'> must return a column, not 2d array
warnings.warn(err)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py::TestAllPreprocessors::test_allpreproc_indv_empty
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py::TestAllPreprocessors::test_allpreproc_indv_empty
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/widgets/preprocessors/atm_corr.py:108:
RuntimeWarning: All-NaN slice encountered
self.preview_data_max = np.nanmax(spectra_mean(data.X))
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owspectralseries.py:
14 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owspectralseries.py:
14 warnings
/usr/lib/python3/dist-packages/Orange/widgets/gui.py:483: DeprecationWarning:
Argument 'valueType' is deprecated and ignored
warnings.warn("Argument 'valueType' is deprecated and ignored",
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
42 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 42
warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52:
UserWarning: _SpSubtractCommon should define __eq__ and __hash__ to be used
for compute_shared
super().__init__(commonfn)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
5 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 5
warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/transform.py:97:
RuntimeWarning: divide by zero encountered in divide
transd = data.X / ref_X
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestTransmittance::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestTransmittance::test_no_infs
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/transform.py:97:
RuntimeWarning: invalid value encountered in divide
transd = data.X / ref_X
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
51 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_tile_reader.py:
2 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 51
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_tile_reader.py: 2
warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52:
UserWarning: _AbsorbanceCommon should define __eq__ and __hash__ to be used
for compute_shared
super().__init__(commonfn)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
5 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 5
warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/transform.py:33:
RuntimeWarning: divide by zero encountered in log10
np.log10(absd, absd)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestAbsorbance::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestAbsorbance::test_no_infs
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/transform.py:38:
RuntimeWarning: divide by zero encountered in log10
absd = np.log10(data.X)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 6
warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/transform.py:32:
RuntimeWarning: divide by zero encountered in divide
absd = ref_X / data.X
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestAbsorbance::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestAbsorbance::test_no_infs
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/transform.py:32:
RuntimeWarning: invalid value encountered in divide
absd = ref_X / data.X
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestNormalize::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestNormalize::test_no_infs
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/__init__.py:402:
RuntimeWarning: invalid value encountered in divide
data.X /= norm_data.X
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestNormalize::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestNormalize::test_no_infs
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/__init__.py:420:
RuntimeWarning: invalid value encountered in divide
data.X = data.X / (max - min)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
5 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 5
warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/__init__.py:462:
RuntimeWarning: divide by zero encountered in divide
return replace_infs(data.X / ref_X)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
42 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 42
warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52:
UserWarning: _NormalizePhaseReferenceCommon should define __eq__ and __hash__
to be used for compute_shared
super().__init__(commonfn)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestNormalizeReference::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestNormalizeReference::test_no_infs
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/__init__.py:462:
RuntimeWarning: invalid value encountered in divide
return replace_infs(data.X / ref_X)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_readers.py::TestOmnicMapReader::test_read
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_readers.py::TestOmnicMapReader::test_read
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/utils/pymca5/OmnicMap.py:148:
RuntimeWarning: invalid value encountered in scalar divide
deltaY = (yPositions[-1] - yPositions[0]) / (self.__nFiles - 1)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_tile_reader.py:
5 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_tile_reader.py: 5
warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/widgets/owtilefile.py:121:
DeprecationWarning: 'addSpace' has been deprecated. Use gui.separator instead.
vbox = gui.radioButtons(None, self, "source", box=True, addSpace=True,
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_xas.py::TestXASnormalization::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_xas.py::TestXASnormalization::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_xas.py::TestXASnormalization::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_xas.py::TestXASnormalization::test_no_infs
/usr/lib/python3/dist-packages/extranormal3/normal_xas.py:83: RuntimeWarning:
invalid value encountered in divide
return
numpy.array((spectrum[1]-preedge_fitcurve[1]-flattening)/norm_const), norm_const
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_xas.py::TestExtractEXAFS::test_file
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_xas.py::TestExtractEXAFS::test_file
/usr/lib/python3/dist-packages/extranormal3/extra_exafs.py:96:
RuntimeWarning: divide by zero encountered in divide
sigma=1./k_interp**kweight
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_irfft.py::TestIRFFT::test_agilent_fft_ab
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_irfft.py:97:
RuntimeWarning: invalid value encountered in log10
ab = np.log10(rsc / ssc)
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_irfft.py::TestIRFFT::test_multi_ab
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_irfft.py:134:
RuntimeWarning: invalid value encountered in log10
ab = np.log10(rsc / ssc)
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owalignstack.py::test_image
/usr/lib/python3/dist-packages/_pytest/python.py:163:
PytestReturnNotNoneWarning: Expected None, but
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owalignstack.py::test_image
returned array([[0., 1., 0., 0., 0., 0., 1.],
[0., 0., 5., 0., 0., 0., 1.],
[0., 0., 0., 3., 0., 0., 1.],
[0., 0., 0., 0., 1., 0., 1.],
[0., 0., 0., 0., 0., 1., 1.]]), which will be an error in a future
version of pytest. Did you mean to use `assert` instead of `return`?
warnings.warn(
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owfft.py::TestOWFFT::test_calculation
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owfft.py:111:
RuntimeWarning: invalid value encountered in log10
calc_abs = np.log10(rsc.X / ssc.X)
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
=========================== short test summary info ============================
FAILED
orangecontrib/spectroscopy/tests/test_xas.py::TestExtractEXAFS::test_file -
AssertionError:
Arrays are not almost equal to 4 decimals
Mismatched elements: 8 / 8 (100%)
Max absolute difference among violations: 0.00066078
Max relative difference among violations: 0.00191092
ACTUAL: array([-0.3465, -0.3459, -0.3444, -0.3419, -0.3386, -0.3344, -0.3294,
-0.3237])
DESIRED: array([-0.3458, -0.3453, -0.3438, -0.3414, -0.3381, -0.3339, -0.329 ,
-0.3233])
FAILED tests/test_xas.py::TestExtractEXAFS::test_file - AssertionError:
Arrays are not almost equal to 4 decimals
Mismatched elements: 8 / 8 (100%)
Max absolute difference among violations: 0.00066078
Max relative difference among violations: 0.00191092
ACTUAL: array([-0.3465, -0.3459, -0.3444, -0.3419, -0.3386, -0.3344, -0.3294,
-0.3237])
DESIRED: array([-0.3458, -0.3453, -0.3438, -0.3414, -0.3381, -0.3339, -0.329 ,
-0.3233])
= 2 failed, 1520 passed, 378 skipped, 192 deselected, 3345 warnings in 162.79s
(0:02:42) =
Widgets left: 0 Max widgets: 24167
E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=1: cd
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build; python3.13
-m pytest --verbosity=2 -k "not Mixin"
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.13
returned exit code 13
make: *** [debian/rules:7: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:
https://people.debian.org/~sanvila/build-logs/202503/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:orange-spectroscopy, so that this is still
visible in the BTS web page for this package.
Thanks.
