Your message dated Wed, 30 Oct 2024 05:43:00 +0000
with message-id <[email protected]>
and subject line Bug#1086312: fixed in rmpi 0.7-2.1-2
has caused the Debian Bug report #1086312,
regarding rmpi: FTBFS: configure: error: Cannot find orted. Rmpi needs orted to
run.
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1086312: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1086312
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:rmpi
Version: 0.7-2.1-1
Severity: serious
Tags: ftbfs
Dear maintainer:
During a rebuild of all packages in unstable, your package failed to build:
--------------------------------------------------------------------------------
[...]
debian/rules build
RExtraInstallFlags="--no-test-load" dh build --buildsystem R
dh_update_autotools_config -O--buildsystem=R
dh_autoreconf -O--buildsystem=R
dh_auto_configure -O--buildsystem=R
dh_auto_build -O--buildsystem=R
dh_auto_test -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary
RExtraInstallFlags="--no-test-load" dh binary --buildsystem R
dh_testroot -O--buildsystem=R
dh_prep -O--buildsystem=R
dh_auto_install --destdir=debian/r-cran-rmpi/ -O--buildsystem=R
I: R Package: Rmpi Version: 0.7-2.1
I: Building using R version 4.4.1-3
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Mon, 23 Sep 2024 07:04:44 -0500
mkdir -p /<<PKGBUILDDIR>>/debian/r-cran-rmpi/usr/lib/R/site-library
I: Using extra install flags: --no-test-load
R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-cran-rmpi/usr/lib/R/site-library
--clean --no-test-load . "--built-timestamp='Mon, 23 Sep 2024 07:04:44 -0500'"
* installing *source* package ‘Rmpi’ ...
files ‘configure’, ‘configure.ac’ have the wrong MD5 checksums
** using staged installation
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking for pkg-config... /usr/bin/pkg-config
checking if pkg-config knows about OpenMPI... yes
checking for orted... no
configure: error: Cannot find orted. Rmpi needs orted to run.
ERROR: configuration failed for package ‘Rmpi’
* removing ‘/<<PKGBUILDDIR>>/debian/r-cran-rmpi/usr/lib/R/site-library/Rmpi’
dh_auto_install: error: R CMD INSTALL -l
/<<PKGBUILDDIR>>/debian/r-cran-rmpi/usr/lib/R/site-library --clean --no-test-load .
"--built-timestamp='Mon, 23 Sep 2024 07:04:44 -0500'" returned exit code 1
make: *** [debian/rules:7: binary] Error 25
dpkg-buildpackage: error: fakeroot debian/rules binary subprocess returned exit
status 2
--------------------------------------------------------------------------------
The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:
https://people.debian.org/~sanvila/build-logs/202410/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and affects, so that this is still visible in the BTS web
page for this package.
Thanks.
--- End Message ---
--- Begin Message ---
Source: rmpi
Source-Version: 0.7-2.1-2
Done: Dirk Eddelbuettel <[email protected]>
We believe that the bug you reported is fixed in the latest version of
rmpi, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Dirk Eddelbuettel <[email protected]> (supplier of updated rmpi package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Tue, 29 Oct 2024 15:28:40 -0500
Source: rmpi
Architecture: source
Version: 0.7-2.1-2
Distribution: unstable
Urgency: medium
Maintainer: Dirk Eddelbuettel <[email protected]>
Changed-By: Dirk Eddelbuettel <[email protected]>
Closes: 1086312
Changes:
rmpi (0.7-2.1-2) unstable; urgency=medium
.
* debian/patches/updated_configure: Adjust for s/orted/prted/ renaming
in OpenMPI binaries, patch also sent upstream (Closes: #1086312)
* debian/patches/series: Updated as well
Checksums-Sha1:
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211b2b87477bc67920bcfe1083af1b44b127dc65 28112 rmpi_0.7-2.1-2.debian.tar.xz
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Checksums-Sha256:
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rmpi_0.7-2.1-2.dsc
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rmpi_0.7-2.1-2.debian.tar.xz
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rmpi_0.7-2.1-2_amd64.buildinfo
Files:
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b634f67ce8f091aae8ccebf43429dffd 28112 gnu-r optional
rmpi_0.7-2.1-2.debian.tar.xz
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rmpi_0.7-2.1-2_amd64.buildinfo
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