Hi Santiago,
On 29 October 2024 at 21:05, Santiago Vila wrote:
| Package: src:rmpi
| Version: 0.7-2.1-1
| Severity: serious
| Tags: ftbfs
|
| Dear maintainer:
|
| During a rebuild of all packages in unstable, your package failed to build:
|
|
--------------------------------------------------------------------------------
| [...]
| debian/rules build
| RExtraInstallFlags="--no-test-load" dh build --buildsystem R
| dh_update_autotools_config -O--buildsystem=R
| dh_autoreconf -O--buildsystem=R
| dh_auto_configure -O--buildsystem=R
| dh_auto_build -O--buildsystem=R
| dh_auto_test -O--buildsystem=R
| create-stamp debian/debhelper-build-stamp
| fakeroot debian/rules binary
| RExtraInstallFlags="--no-test-load" dh binary --buildsystem R
| dh_testroot -O--buildsystem=R
| dh_prep -O--buildsystem=R
| dh_auto_install --destdir=debian/r-cran-rmpi/ -O--buildsystem=R
| I: R Package: Rmpi Version: 0.7-2.1
| I: Building using R version 4.4.1-3
| I: R API version: r-api-4.0
| I: Using built-time from d/changelog: Mon, 23 Sep 2024 07:04:44 -0500
| mkdir -p /<<PKGBUILDDIR>>/debian/r-cran-rmpi/usr/lib/R/site-library
| I: Using extra install flags: --no-test-load
| R CMD INSTALL -l
/<<PKGBUILDDIR>>/debian/r-cran-rmpi/usr/lib/R/site-library --clean
--no-test-load . "--built-timestamp='Mon, 23 Sep 2024 07:04:44 -0500'"
| * installing *source* package ‘Rmpi’ ...
| files ‘configure’, ‘configure.ac’ have the wrong MD5 checksums
| ** using staged installation
| checking for gcc... gcc
| checking whether the C compiler works... yes
| checking for C compiler default output file name... a.out
| checking for suffix of executables...
| checking whether we are cross compiling... no
| checking for suffix of object files... o
| checking whether the compiler supports GNU C... yes
| checking whether gcc accepts -g... yes
| checking for gcc option to enable C11 features... none needed
| checking for pkg-config... /usr/bin/pkg-config
| checking if pkg-config knows about OpenMPI... yes
| checking for orted... no
| configure: error: Cannot find orted. Rmpi needs orted to run.
This is the crux, and I do not understand it. My last build here (in
September) was still against OpenMPI 4.* and it worked
checking if pkg-config knows about OpenMPI... yes
checking for orted... yes
Now we have OpenMPI 5.*, and orted is clearly in /usr/bin/orted but it is not
being found.
The (upstream) autoconf logic is simple:
if test "$MPITYPE" = "OPENMPI" ; then
AC_CHECK_PROG(ORTED, orted, yes, no)
if test "$ORTED" = no ; then
AC_MSG_ERROR(Cannot find orted. Rmpi needs orted to run.)
fi
fi
Why would that fail? Any idea? Any other OpenMPI-using packages having issues?
Dirk
| ERROR: configuration failed for package ‘Rmpi’
| * removing ‘/<<PKGBUILDDIR>>/debian/r-cran-rmpi/usr/lib/R/site-library/Rmpi’
| dh_auto_install: error: R CMD INSTALL -l
/<<PKGBUILDDIR>>/debian/r-cran-rmpi/usr/lib/R/site-library --clean
--no-test-load . "--built-timestamp='Mon, 23 Sep 2024 07:04:44 -0500'" returned
exit code 1
| make: *** [debian/rules:7: binary] Error 25
| dpkg-buildpackage: error: fakeroot debian/rules binary subprocess returned
exit status 2
|
--------------------------------------------------------------------------------
|
| The above is just how the build ends and not necessarily the most relevant
part.
| If required, the full build log is available here:
|
| https://people.debian.org/~sanvila/build-logs/202410/
|
| About the archive rebuild: The build was made on virtual machines from AWS,
| using sbuild and a reduced chroot with only build-essential packages.
|
| If you could not reproduce the bug please contact me privately, as I
| am willing to provide ssh access to a virtual machine where the bug is
| fully reproducible.
|
| If this is really a bug in one of the build-depends, please use
| reassign and affects, so that this is still visible in the BTS web
| page for this package.
|
| Thanks.
--
dirk.eddelbuettel.com | @eddelbuettel | [email protected]
