Control: retitle -1 openstructure FTBFS with scipy 1.12
Control: tags -1 patch
On Tue, Jun 25, 2024 at 05:29:20PM +0300, Andrius Merkys wrote:
> control: forwarded -1 openstructure-us...@maillist.unibas.ch
>
> On 2024-06-16 16:08, Lucas Nussbaum wrote:
> > ======================================================================
> > ERROR: testSpearmanCorrel (__main__.TestTable.testSpearmanCorrel)
> > ----------------------------------------------------------------------
> > Traceback (most recent call last):
> > File "/<<PKGBUILDDIR>>/modules/base/tests/test_table.py", line 1668, in
> > testSpearmanCorrel
> > self.assertAlmostEqual(tab.SpearmanCorrel('second','third'),
> > -0.316227766)
> > File "/usr/lib/python3.11/unittest/case.py", line 904, in
> > assertAlmostEqual
> > diff = abs(first - second)
> > ~~~~~~^~~~~~~~
> > TypeError: unsupported operand type(s) for -: 'NoneType' and 'float'
>
> This failure seems to have been caused by an API change in scipy. I have
> reported the issue upstream. A simple fix would be to skip this test
> entirely via a patch. In the meantime let us wait for upstream's response.
This has now been fixed upstream:
https://git.scicore.unibas.ch/schwede/openstructure/-/commit/15a499485ede152b6d432b7c91f1084e9e11bd8f
> Andrius
cu
Adrian
