Source: openstructure
Version: 2.5.0-2
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: lu...@debian.org
Usertags: ftbfs-20240615 ftbfs-trixie
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
> [ 95%] running checks test_table.py
> cd /<<PKGBUILDDIR>>/modules/base/tests && sh -c
> "PYTHONPATH=/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/lib/python3.11/dist-packages/
> /usr/bin/python3 /<<PKGBUILDDIR>>/modules/base/tests/test_table.py"
> Compound library not available. Some functionality may not work as expected.
> In file included from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/composite2.hh:27,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/composite.hh:22,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/geom.hh:28,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/mol/query_state.hh:26,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/mol/query.hh:39,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/mol/residue_view.hh:22,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/seq/sequence_handle.hh:34,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/seq/alignment_handle.hh:28,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/sequence_identity.hh:26,
> from
> /<<PKGBUILDDIR>>/modules/seq/alg/tests/test_sequence_identity.cc:25:
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:25:41:
> warning: ‘template<class _Category, class _Tp, class _Distance, class
> _Pointer, class _Reference> struct std::iterator’ is deprecated
> [-Wdeprecated-declarations]
> 25 | class const_circular_iter : public
> std::iterator<std::bidirectional_iterator_tag,typename T::value_type>
> | ^~~~~~~~
> In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66,
> from /usr/include/c++/13/string:47,
> from
> /usr/include/boost/test/utils/basic_cstring/bcs_char_traits.hpp:25,
> from
> /usr/include/boost/test/utils/basic_cstring/basic_cstring.hpp:21,
> from /usr/include/boost/test/detail/global_typedef.hpp:15,
> from
> /usr/include/boost/test/tools/detail/print_helper.hpp:20,
> from /usr/include/boost/test/utils/lazy_ostream.hpp:16,
> from /usr/include/boost/test/tools/context.hpp:19,
> from /usr/include/boost/test/test_tools.hpp:42,
> from /usr/include/boost/test/unit_test.hpp:18,
> from
> /<<PKGBUILDDIR>>/modules/seq/alg/tests/test_sequence_identity.cc:24:
> /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
> 127 | struct _GLIBCXX17_DEPRECATED iterator
> | ^~~~~~~~
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:100:35:
> warning: ‘template<class _Category, class _Tp, class _Distance, class
> _Pointer, class _Reference> struct std::iterator’ is deprecated
> [-Wdeprecated-declarations]
> 100 | class circular_iter : public
> std::iterator<std::bidirectional_iterator_tag,typename T::value_type>
> | ^~~~~~~~
> /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
> 127 | struct _GLIBCXX17_DEPRECATED iterator
> | ^~~~~~~~
> In file included from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/seq/sequence_list.hh:23,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/seq/alignment_handle.hh:29:
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_list_iterator.hh:32:17:
> warning: ‘template<class _Category, class _Tp, class _Distance, class
> _Pointer, class _Reference> struct std::iterator’ is deprecated
> [-Wdeprecated-declarations]
> 32 | : public std::iterator<std::random_access_iterator_tag, T>{
> | ^~~~~~~~
> /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
> 127 | struct _GLIBCXX17_DEPRECATED iterator
> | ^~~~~~~~
> In file included from /usr/include/c++/13/string:54:
> In member function ‘std::__cxx11::basic_string<_CharT, _Traits,
> _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits,
> _Alloc>::length() const [with _CharT = char; _Traits =
> std::char_traits<char>; _Alloc = std::allocator<char>]’,
> inlined from ‘std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&
> std::__cxx11::basic_string<_CharT, _Traits,
> _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&)
> [with _CharT = char; _Traits = std::char_traits<char>; _Alloc =
> std::allocator<char>]’ at /usr/include/c++/13/bits/basic_string.h:899:15,
> inlined from ‘void
> boost::detail::variant::move_storage::internal_visit(T&, int) const [with T =
> std::__cxx11::basic_string<char>]’ at
> /usr/include/boost/variant/variant.hpp:597:21,
> inlined from ‘typename Visitor::result_type
> boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV,
> T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T =
> std::__cxx11::basic_string<char>]’ at
> /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
> inlined from ‘typename Visitor::result_type
> boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*,
> NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T =
> std::__cxx11::basic_string<char>; NoBackupFlag =
> boost::variant<std::__cxx11::basic_string<char>, float, int, bool,
> geom::Vec3>::has_fallback_type_]’ at
> /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
> inlined from ‘typename Visitor::result_type
> boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV,
> mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>;
> step0 =
> visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>,
> std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float,
> boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>,
> bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > >
> > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage;
> VoidPtrCV = void*; NoBackupFlag =
> boost::variant<std::__cxx11::basic_string<char>, float, int, bool,
> geom::Vec3>::has_fallback_type_]’ at
> /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
> inlined from ‘static typename Visitor::result_type boost::variant<T0,
> TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor
> = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ =
> std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]’ at
> /usr/include/boost/variant/variant.hpp:2338:48,
> inlined from ‘typename Visitor::result_type boost::variant<T0,
> TN>::internal_apply_visitor(Visitor&) [with Visitor =
> boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>;
> TN = {float, int, bool, geom::Vec3}]’ at
> /usr/include/boost/variant/variant.hpp:2350:43,
> inlined from ‘void boost::variant<T0,
> TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ =
> std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]’ at
> /usr/include/boost/variant/variant.hpp:2081:41,
> inlined from ‘void boost::variant<T0, TN>::assign(const T&) [with T =
> float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool,
> geom::Vec3}]’ at /usr/include/boost/variant/variant.hpp:2108:27,
> inlined from ‘void boost::variant<T0, TN>::assign(const T&) [with T =
> float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool,
> geom::Vec3}]’ at /usr/include/boost/variant/variant.hpp:2095:10,
> inlined from ‘typename boost::enable_if<boost::mpl::or_<boost::is_same<T,
> boost::variant<T0, TN> >,
> boost::detail::variant::is_variant_constructible_from<const T&, typename
> boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0,
> TN>::is_recursive_, boost::mpl::transform<typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_,
> boost::mpl::identity<T> >::type,
> boost::detail::variant::make_variant_list<typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_,
> boost::mpl::identity<T> >::type, TN ...> >::type,
> boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0,
> TN> > > >, boost::mpl::identity<typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_,
> boost::mpl::identity<T> >::type,
> boost::detail::variant::make_variant_list<typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_,
> boost::mpl::identity<T> >::type, TN ...> >::type> >::type,
> boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type>
> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0,
> TN>::operator=(const T&) [with T = float; T0_ =
> std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]’ at
> /usr/include/boost/variant/variant.hpp:2160:15,
> inlined from ‘void ost::GenericPropContainer<H>::SetFloatProp(const
> String&, Real) [with H = ost::mol::ChainBase]’ at
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38,
> inlined from ‘ost::mol::EntityHandle make_query_test_entity()’ at
> /<<PKGBUILDDIR>>/modules/mol/base/tests/test_query.cc:36:21:
> /usr/include/c++/13/bits/basic_string.h:1079:16: warning: ‘*(const
> std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char>
> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, float, int, bool,
> geom::Vec3>,boost::variant<std::__cxx11::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, float, int, bool,
> geom::Vec3>::storage_.boost::aligned_storage<32,
> 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32,
> 8>::data_)).std::__cxx11::basic_string<char>::_M_string_length’ may be used
> uninitialized [-Wmaybe-uninitialized]
> 1079 | { return _M_string_length; }
> | ^~~~~~~~~~~~~~~~
> In file included from /usr/include/boost/variant.hpp:17,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/mol/query.hh:30:
> /usr/include/boost/variant/variant.hpp: In function ‘ost::mol::EntityHandle
> make_query_test_entity()’:
> /usr/include/boost/variant/variant.hpp:2107:21: note: ‘temp’ declared here
> 2107 | variant temp(rhs);
> | ^~~~
> In file included from /usr/include/c++/13/string:42:
> In static member function ‘static constexpr void
> std::char_traits<char>::assign(char_type&, const char_type&)’,
> inlined from ‘static void std::__cxx11::basic_string<_CharT, _Traits,
> _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char;
> _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]’ at
> /usr/include/c++/13/bits/basic_string.h:428:23,
> inlined from ‘std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&
> std::__cxx11::basic_string<_CharT, _Traits,
> _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&)
> [with _CharT = char; _Traits = std::char_traits<char>; _Alloc =
> std::allocator<char>]’ at /usr/include/c++/13/bits/basic_string.h:877:18,
> inlined from ‘void
> boost::detail::variant::move_storage::internal_visit(T&, int) const [with T =
> std::__cxx11::basic_string<char>]’ at
> /usr/include/boost/variant/variant.hpp:597:21,
> inlined from ‘typename Visitor::result_type
> boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV,
> T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T =
> std::__cxx11::basic_string<char>]’ at
> /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
> inlined from ‘typename Visitor::result_type
> boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*,
> NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T =
> std::__cxx11::basic_string<char>; NoBackupFlag =
> boost::variant<std::__cxx11::basic_string<char>, float, int, bool,
> geom::Vec3>::has_fallback_type_]’ at
> /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
> inlined from ‘typename Visitor::result_type
> boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV,
> mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>;
> step0 =
> visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>,
> std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float,
> boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>,
> bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > >
> > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage;
> VoidPtrCV = void*; NoBackupFlag =
> boost::variant<std::__cxx11::basic_string<char>, float, int, bool,
> geom::Vec3>::has_fallback_type_]’ at
> /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
> inlined from ‘static typename Visitor::result_type boost::variant<T0,
> TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor
> = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ =
> std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]’ at
> /usr/include/boost/variant/variant.hpp:2338:48,
> inlined from ‘typename Visitor::result_type boost::variant<T0,
> TN>::internal_apply_visitor(Visitor&) [with Visitor =
> boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>;
> TN = {float, int, bool, geom::Vec3}]’ at
> /usr/include/boost/variant/variant.hpp:2350:43,
> inlined from ‘void boost::variant<T0,
> TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ =
> std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]’ at
> /usr/include/boost/variant/variant.hpp:2081:41,
> inlined from ‘void boost::variant<T0, TN>::assign(const T&) [with T =
> float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool,
> geom::Vec3}]’ at /usr/include/boost/variant/variant.hpp:2108:27,
> inlined from ‘void boost::variant<T0, TN>::assign(const T&) [with T =
> float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool,
> geom::Vec3}]’ at /usr/include/boost/variant/variant.hpp:2095:10,
> inlined from ‘typename boost::enable_if<boost::mpl::or_<boost::is_same<T,
> boost::variant<T0, TN> >,
> boost::detail::variant::is_variant_constructible_from<const T&, typename
> boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0,
> TN>::is_recursive_, boost::mpl::transform<typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_,
> boost::mpl::identity<T> >::type,
> boost::detail::variant::make_variant_list<typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_,
> boost::mpl::identity<T> >::type, TN ...> >::type,
> boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0,
> TN> > > >, boost::mpl::identity<typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_,
> boost::mpl::identity<T> >::type,
> boost::detail::variant::make_variant_list<typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_,
> boost::mpl::identity<T> >::type, TN ...> >::type> >::type,
> boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type>
> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0,
> TN>::operator=(const T&) [with T = float; T0_ =
> std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]’ at
> /usr/include/boost/variant/variant.hpp:2160:15,
> inlined from ‘void ost::GenericPropContainer<H>::SetFloatProp(const
> String&, Real) [with H = ost::mol::ChainBase]’ at
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38,
> inlined from ‘ost::mol::EntityHandle make_query_test_entity()’ at
> /<<PKGBUILDDIR>>/modules/mol/base/tests/test_query.cc:36:21:
> /usr/include/c++/13/bits/char_traits.h:358:16: warning: ‘((const
> std::char_traits<char>::char_type*)((char*)&temp +
> offsetof(boost::variant<std::__cxx11::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, float, int, bool,
> geom::Vec3>,boost::variant<std::__cxx11::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, float, int, bool,
> geom::Vec3>::storage_.boost::aligned_storage<32,
> 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32,
> 8>::data_)))[16]’ may be used uninitialized [-Wmaybe-uninitialized]
> 358 | __c1 = __c2;
> | ^~~~
> /usr/include/boost/variant/variant.hpp: In function ‘ost::mol::EntityHandle
> make_query_test_entity()’:
> /usr/include/boost/variant/variant.hpp:2107:21: note: ‘temp’ declared here
> 2107 | variant temp(rhs);
> | ^~~~
> In member function ‘std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&
> std::__cxx11::basic_string<_CharT, _Traits,
> _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&)
> [with _CharT = char; _Traits = std::char_traits<char>; _Alloc =
> std::allocator<char>]’,
> inlined from ‘void
> boost::detail::variant::move_storage::internal_visit(T&, int) const [with T =
> std::__cxx11::basic_string<char>]’ at
> /usr/include/boost/variant/variant.hpp:597:21,
> inlined from ‘typename Visitor::result_type
> boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV,
> T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T =
> std::__cxx11::basic_string<char>]’ at
> /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
> inlined from ‘typename Visitor::result_type
> boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*,
> NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T =
> std::__cxx11::basic_string<char>; NoBackupFlag =
> boost::variant<std::__cxx11::basic_string<char>, float, int, bool,
> geom::Vec3>::has_fallback_type_]’ at
> /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
> inlined from ‘typename Visitor::result_type
> boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV,
> mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>;
> step0 =
> visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>,
> std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float,
> boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>,
> bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > >
> > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage;
> VoidPtrCV = void*; NoBackupFlag =
> boost::variant<std::__cxx11::basic_string<char>, float, int, bool,
> geom::Vec3>::has_fallback_type_]’ at
> /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
> inlined from ‘static typename Visitor::result_type boost::variant<T0,
> TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor
> = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ =
> std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]’ at
> /usr/include/boost/variant/variant.hpp:2338:48,
> inlined from ‘typename Visitor::result_type boost::variant<T0,
> TN>::internal_apply_visitor(Visitor&) [with Visitor =
> boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>;
> TN = {float, int, bool, geom::Vec3}]’ at
> /usr/include/boost/variant/variant.hpp:2350:43,
> inlined from ‘void boost::variant<T0,
> TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ =
> std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]’ at
> /usr/include/boost/variant/variant.hpp:2081:41,
> inlined from ‘void boost::variant<T0, TN>::assign(const T&) [with T =
> float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool,
> geom::Vec3}]’ at /usr/include/boost/variant/variant.hpp:2108:27,
> inlined from ‘void boost::variant<T0, TN>::assign(const T&) [with T =
> float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool,
> geom::Vec3}]’ at /usr/include/boost/variant/variant.hpp:2095:10,
> inlined from ‘typename boost::enable_if<boost::mpl::or_<boost::is_same<T,
> boost::variant<T0, TN> >,
> boost::detail::variant::is_variant_constructible_from<const T&, typename
> boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0,
> TN>::is_recursive_, boost::mpl::transform<typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_,
> boost::mpl::identity<T> >::type,
> boost::detail::variant::make_variant_list<typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_,
> boost::mpl::identity<T> >::type, TN ...> >::type,
> boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0,
> TN> > > >, boost::mpl::identity<typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_,
> boost::mpl::identity<T> >::type,
> boost::detail::variant::make_variant_list<typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_,
> boost::mpl::identity<T> >::type, TN ...> >::type> >::type,
> boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type>
> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0,
> TN>::operator=(const T&) [with T = float; T0_ =
> std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]’ at
> /usr/include/boost/variant/variant.hpp:2160:15,
> inlined from ‘void ost::GenericPropContainer<H>::SetFloatProp(const
> String&, Real) [with H = ost::mol::ChainBase]’ at
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38,
> inlined from ‘ost::mol::EntityHandle make_query_test_entity()’ at
> /<<PKGBUILDDIR>>/modules/mol/base/tests/test_query.cc:36:21:
> /usr/include/c++/13/bits/basic_string.h:900:24: warning:
> ‘*(std::__cxx11::basic_string<char, std::char_traits<char>,
> std::allocator<char> >*)((char*)&temp +
> offsetof(boost::variant<std::__cxx11::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, float, int, bool,
> geom::Vec3>,boost::variant<std::__cxx11::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, float, int, bool,
> geom::Vec3>::storage_.boost::aligned_storage<32,
> 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32,
> 8>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed
> union>::_M_allocated_capacity’ may be used uninitialized
> [-Wmaybe-uninitialized]
> 900 | _M_capacity(__str._M_allocated_capacity);
> | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /usr/include/boost/variant/variant.hpp: In function ‘ost::mol::EntityHandle
> make_query_test_entity()’:
> /usr/include/boost/variant/variant.hpp:2107:21: note: ‘temp’ declared here
> 2107 | variant temp(rhs);
> | ^~~~
> In member function ‘bool std::__cxx11::basic_string<_CharT, _Traits,
> _Alloc>::_M_is_local() const [with _CharT = char; _Traits =
> std::char_traits<char>; _Alloc = std::allocator<char>]’,
> inlined from ‘std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&
> std::__cxx11::basic_string<_CharT, _Traits,
> _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&)
> [with _CharT = char; _Traits = std::char_traits<char>; _Alloc =
> std::allocator<char>]’ at /usr/include/c++/13/bits/basic_string.h:869:23,
> inlined from ‘void
> boost::detail::variant::move_storage::internal_visit(T&, int) const [with T =
> std::__cxx11::basic_string<char>]’ at
> /usr/include/boost/variant/variant.hpp:597:21,
> inlined from ‘typename Visitor::result_type
> boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV,
> T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T =
> std::__cxx11::basic_string<char>]’ at
> /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
> inlined from ‘typename Visitor::result_type
> boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*,
> NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T =
> std::__cxx11::basic_string<char>; NoBackupFlag =
> boost::variant<std::__cxx11::basic_string<char>, float, int, bool,
> geom::Vec3>::has_fallback_type_]’ at
> /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
> inlined from ‘typename Visitor::result_type
> boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV,
> mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>;
> step0 =
> visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>,
> std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float,
> boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>,
> bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > >
> > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage;
> VoidPtrCV = void*; NoBackupFlag =
> boost::variant<std::__cxx11::basic_string<char>, float, int, bool,
> geom::Vec3>::has_fallback_type_]’ at
> /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
> inlined from ‘static typename Visitor::result_type boost::variant<T0,
> TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor
> = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ =
> std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]’ at
> /usr/include/boost/variant/variant.hpp:2338:48,
> inlined from ‘typename Visitor::result_type boost::variant<T0,
> TN>::internal_apply_visitor(Visitor&) [with Visitor =
> boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>;
> TN = {float, int, bool, geom::Vec3}]’ at
> /usr/include/boost/variant/variant.hpp:2350:43,
> inlined from ‘void boost::variant<T0,
> TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ =
> std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]’ at
> /usr/include/boost/variant/variant.hpp:2081:41,
> inlined from ‘void boost::variant<T0, TN>::assign(const T&) [with T =
> float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool,
> geom::Vec3}]’ at /usr/include/boost/variant/variant.hpp:2108:27,
> inlined from ‘void boost::variant<T0, TN>::assign(const T&) [with T =
> float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool,
> geom::Vec3}]’ at /usr/include/boost/variant/variant.hpp:2095:10,
> inlined from ‘typename boost::enable_if<boost::mpl::or_<boost::is_same<T,
> boost::variant<T0, TN> >,
> boost::detail::variant::is_variant_constructible_from<const T&, typename
> boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0,
> TN>::is_recursive_, boost::mpl::transform<typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_,
> boost::mpl::identity<T> >::type,
> boost::detail::variant::make_variant_list<typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_,
> boost::mpl::identity<T> >::type, TN ...> >::type,
> boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0,
> TN> > > >, boost::mpl::identity<typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_,
> boost::mpl::identity<T> >::type,
> boost::detail::variant::make_variant_list<typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_,
> boost::mpl::identity<T> >::type, TN ...> >::type> >::type,
> boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type>
> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0,
> TN>::operator=(const T&) [with T = float; T0_ =
> std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]’ at
> /usr/include/boost/variant/variant.hpp:2160:15,
> inlined from ‘void ost::GenericPropContainer<H>::SetFloatProp(const
> String&, Real) [with H = ost::mol::ResidueBase]’ at
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38,
> inlined from ‘ost::mol::EntityHandle make_query_test_entity()’ at
> /<<PKGBUILDDIR>>/modules/mol/base/tests/test_query.cc:38:19:
> /usr/include/c++/13/bits/basic_string.h:266:17: warning: ‘*(const
> std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char>
> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, float, int, bool,
> geom::Vec3>,boost::variant<std::__cxx11::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, float, int, bool,
> geom::Vec3>::storage_.boost::aligned_storage<32,
> 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32,
> 8>::data_)).std::__cxx11::basic_string<char>::_M_string_length’ may be used
> uninitialized [-Wmaybe-uninitialized]
> 266 | if (_M_string_length > _S_local_capacity)
> | ^~~~~~~~~~~~~~~~
> /usr/include/boost/variant/variant.hpp: In function ‘ost::mol::EntityHandle
> make_query_test_entity()’:
> /usr/include/boost/variant/variant.hpp:2107:21: note: ‘temp’ declared here
> 2107 | variant temp(rhs);
> | ^~~~
> In member function ‘std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&
> std::__cxx11::basic_string<_CharT, _Traits,
> _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&)
> [with _CharT = char; _Traits = std::char_traits<char>; _Alloc =
> std::allocator<char>]’,
> inlined from ‘void
> boost::detail::variant::move_storage::internal_visit(T&, int) const [with T =
> std::__cxx11::basic_string<char>]’ at
> /usr/include/boost/variant/variant.hpp:597:21,
> inlined from ‘typename Visitor::result_type
> boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV,
> T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T =
> std::__cxx11::basic_string<char>]’ at
> /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
> inlined from ‘typename Visitor::result_type
> boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*,
> NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T =
> std::__cxx11::basic_string<char>; NoBackupFlag =
> boost::variant<std::__cxx11::basic_string<char>, float, int, bool,
> geom::Vec3>::has_fallback_type_]’ at
> /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
> inlined from ‘typename Visitor::result_type
> boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV,
> mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>;
> step0 =
> visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>,
> std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float,
> boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>,
> bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > >
> > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage;
> VoidPtrCV = void*; NoBackupFlag =
> boost::variant<std::__cxx11::basic_string<char>, float, int, bool,
> geom::Vec3>::has_fallback_type_]’ at
> /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
> inlined from ‘static typename Visitor::result_type boost::variant<T0,
> TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor
> = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ =
> std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]’ at
> /usr/include/boost/variant/variant.hpp:2338:48,
> inlined from ‘typename Visitor::result_type boost::variant<T0,
> TN>::internal_apply_visitor(Visitor&) [with Visitor =
> boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>;
> TN = {float, int, bool, geom::Vec3}]’ at
> /usr/include/boost/variant/variant.hpp:2350:43,
> inlined from ‘void boost::variant<T0,
> TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ =
> std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]’ at
> /usr/include/boost/variant/variant.hpp:2081:41,
> inlined from ‘void boost::variant<T0, TN>::assign(const T&) [with T =
> float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool,
> geom::Vec3}]’ at /usr/include/boost/variant/variant.hpp:2108:27,
> inlined from ‘void boost::variant<T0, TN>::assign(const T&) [with T =
> float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool,
> geom::Vec3}]’ at /usr/include/boost/variant/variant.hpp:2095:10,
> inlined from ‘typename boost::enable_if<boost::mpl::or_<boost::is_same<T,
> boost::variant<T0, TN> >,
> boost::detail::variant::is_variant_constructible_from<const T&, typename
> boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0,
> TN>::is_recursive_, boost::mpl::transform<typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_,
> boost::mpl::identity<T> >::type,
> boost::detail::variant::make_variant_list<typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_,
> boost::mpl::identity<T> >::type, TN ...> >::type,
> boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0,
> TN> > > >, boost::mpl::identity<typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_,
> boost::mpl::identity<T> >::type,
> boost::detail::variant::make_variant_list<typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_,
> boost::mpl::identity<T> >::type, TN ...> >::type> >::type,
> boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type>
> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0,
> TN>::operator=(const T&) [with T = float; T0_ =
> std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]’ at
> /usr/include/boost/variant/variant.hpp:2160:15,
> inlined from ‘void ost::GenericPropContainer<H>::SetFloatProp(const
> String&, Real) [with H = ost::mol::ResidueBase]’ at
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38,
> inlined from ‘ost::mol::EntityHandle make_query_test_entity()’ at
> /<<PKGBUILDDIR>>/modules/mol/base/tests/test_query.cc:38:19:
> /usr/include/c++/13/bits/basic_string.h:900:24: warning:
> ‘*(std::__cxx11::basic_string<char, std::char_traits<char>,
> std::allocator<char> >*)((char*)&temp +
> offsetof(boost::variant<std::__cxx11::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, float, int, bool,
> geom::Vec3>,boost::variant<std::__cxx11::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, float, int, bool,
> geom::Vec3>::storage_.boost::aligned_storage<32,
> 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32,
> 8>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed
> union>::_M_allocated_capacity’ may be used uninitialized
> [-Wmaybe-uninitialized]
> 900 | _M_capacity(__str._M_allocated_capacity);
> | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /usr/include/boost/variant/variant.hpp: In function ‘ost::mol::EntityHandle
> make_query_test_entity()’:
> /usr/include/boost/variant/variant.hpp:2107:21: note: ‘temp’ declared here
> 2107 | variant temp(rhs);
> | ^~~~
> In static member function ‘static constexpr void
> std::char_traits<char>::assign(char_type&, const char_type&)’,
> inlined from ‘static void std::__cxx11::basic_string<_CharT, _Traits,
> _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char;
> _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]’ at
> /usr/include/c++/13/bits/basic_string.h:428:23,
> inlined from ‘std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&
> std::__cxx11::basic_string<_CharT, _Traits,
> _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&)
> [with _CharT = char; _Traits = std::char_traits<char>; _Alloc =
> std::allocator<char>]’ at /usr/include/c++/13/bits/basic_string.h:877:18,
> inlined from ‘void
> boost::detail::variant::move_storage::internal_visit(T&, int) const [with T =
> std::__cxx11::basic_string<char>]’ at
> /usr/include/boost/variant/variant.hpp:597:21,
> inlined from ‘typename Visitor::result_type
> boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV,
> T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T =
> std::__cxx11::basic_string<char>]’ at
> /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
> inlined from ‘typename Visitor::result_type
> boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*,
> NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T =
> std::__cxx11::basic_string<char>; NoBackupFlag =
> boost::variant<std::__cxx11::basic_string<char>, float, int, bool,
> geom::Vec3>::has_fallback_type_]’ at
> /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
> inlined from ‘typename Visitor::result_type
> boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV,
> mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>;
> step0 =
> visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>,
> std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float,
> boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>,
> bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > >
> > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage;
> VoidPtrCV = void*; NoBackupFlag =
> boost::variant<std::__cxx11::basic_string<char>, float, int, bool,
> geom::Vec3>::has_fallback_type_]’ at
> /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
> inlined from ‘static typename Visitor::result_type boost::variant<T0,
> TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor
> = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ =
> std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]’ at
> /usr/include/boost/variant/variant.hpp:2338:48,
> inlined from ‘typename Visitor::result_type boost::variant<T0,
> TN>::internal_apply_visitor(Visitor&) [with Visitor =
> boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>;
> TN = {float, int, bool, geom::Vec3}]’ at
> /usr/include/boost/variant/variant.hpp:2350:43,
> inlined from ‘void boost::variant<T0,
> TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ =
> std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]’ at
> /usr/include/boost/variant/variant.hpp:2081:41,
> inlined from ‘void boost::variant<T0, TN>::assign(const T&) [with T =
> float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool,
> geom::Vec3}]’ at /usr/include/boost/variant/variant.hpp:2108:27,
> inlined from ‘void boost::variant<T0, TN>::assign(const T&) [with T =
> float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool,
> geom::Vec3}]’ at /usr/include/boost/variant/variant.hpp:2095:10,
> inlined from ‘typename boost::enable_if<boost::mpl::or_<boost::is_same<T,
> boost::variant<T0, TN> >,
> boost::detail::variant::is_variant_constructible_from<const T&, typename
> boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0,
> TN>::is_recursive_, boost::mpl::transform<typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_,
> boost::mpl::identity<T> >::type,
> boost::detail::variant::make_variant_list<typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_,
> boost::mpl::identity<T> >::type, TN ...> >::type,
> boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0,
> TN> > > >, boost::mpl::identity<typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_,
> boost::mpl::identity<T> >::type,
> boost::detail::variant::make_variant_list<typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_,
> boost::mpl::identity<T> >::type, TN ...> >::type> >::type,
> boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type>
> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0,
> TN>::operator=(const T&) [with T = float; T0_ =
> std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]’ at
> /usr/include/boost/variant/variant.hpp:2160:15,
> inlined from ‘void ost::GenericPropContainer<H>::SetFloatProp(const
> String&, Real) [with H = ost::mol::ResidueBase]’ at
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38,
> inlined from ‘ost::mol::EntityHandle make_query_test_entity()’ at
> /<<PKGBUILDDIR>>/modules/mol/base/tests/test_query.cc:38:19:
> /usr/include/c++/13/bits/char_traits.h:358:16: warning: ‘((const
> std::char_traits<char>::char_type*)((char*)&temp +
> offsetof(boost::variant<std::__cxx11::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, float, int, bool,
> geom::Vec3>,boost::variant<std::__cxx11::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, float, int, bool,
> geom::Vec3>::storage_.boost::aligned_storage<32,
> 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32,
> 8>::data_)))[16]’ may be used uninitialized [-Wmaybe-uninitialized]
> 358 | __c1 = __c2;
> | ^~~~
> /usr/include/boost/variant/variant.hpp: In function ‘ost::mol::EntityHandle
> make_query_test_entity()’:
> /usr/include/boost/variant/variant.hpp:2107:21: note: ‘temp’ declared here
> 2107 | variant temp(rhs);
> | ^~~~
> In member function ‘bool std::__cxx11::basic_string<_CharT, _Traits,
> _Alloc>::_M_is_local() const [with _CharT = char; _Traits =
> std::char_traits<char>; _Alloc = std::allocator<char>]’,
> inlined from ‘std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&
> std::__cxx11::basic_string<_CharT, _Traits,
> _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&)
> [with _CharT = char; _Traits = std::char_traits<char>; _Alloc =
> std::allocator<char>]’ at /usr/include/c++/13/bits/basic_string.h:869:23,
> inlined from ‘void
> boost::detail::variant::move_storage::internal_visit(T&, int) const [with T =
> std::__cxx11::basic_string<char>]’ at
> /usr/include/boost/variant/variant.hpp:597:21,
> inlined from ‘typename Visitor::result_type
> boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV,
> T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T =
> std::__cxx11::basic_string<char>]’ at
> /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
> inlined from ‘typename Visitor::result_type
> boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*,
> NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T =
> std::__cxx11::basic_string<char>; NoBackupFlag =
> boost::variant<std::__cxx11::basic_string<char>, float, int, bool,
> geom::Vec3>::has_fallback_type_]’ at
> /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
> inlined from ‘typename Visitor::result_type
> boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV,
> mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>;
> step0 =
> visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>,
> std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float,
> boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>,
> bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > >
> > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage;
> VoidPtrCV = void*; NoBackupFlag =
> boost::variant<std::__cxx11::basic_string<char>, float, int, bool,
> geom::Vec3>::has_fallback_type_]’ at
> /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
> inlined from ‘static typename Visitor::result_type boost::variant<T0,
> TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor
> = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ =
> std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]’ at
> /usr/include/boost/variant/variant.hpp:2338:48,
> inlined from ‘typename Visitor::result_type boost::variant<T0,
> TN>::internal_apply_visitor(Visitor&) [with Visitor =
> boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>;
> TN = {float, int, bool, geom::Vec3}]’ at
> /usr/include/boost/variant/variant.hpp:2350:43,
> inlined from ‘void boost::variant<T0,
> TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ =
> std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]’ at
> /usr/include/boost/variant/variant.hpp:2081:41,
> inlined from ‘void boost::variant<T0, TN>::assign(const T&) [with T =
> float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool,
> geom::Vec3}]’ at /usr/include/boost/variant/variant.hpp:2108:27,
> inlined from ‘void boost::variant<T0, TN>::assign(const T&) [with T =
> float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool,
> geom::Vec3}]’ at /usr/include/boost/variant/variant.hpp:2095:10,
> inlined from ‘typename boost::enable_if<boost::mpl::or_<boost::is_same<T,
> boost::variant<T0, TN> >,
> boost::detail::variant::is_variant_constructible_from<const T&, typename
> boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0,
> TN>::is_recursive_, boost::mpl::transform<typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_,
> boost::mpl::identity<T> >::type,
> boost::detail::variant::make_variant_list<typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_,
> boost::mpl::identity<T> >::type, TN ...> >::type,
> boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0,
> TN> > > >, boost::mpl::identity<typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_,
> boost::mpl::identity<T> >::type,
> boost::detail::variant::make_variant_list<typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_,
> boost::mpl::identity<T> >::type, TN ...> >::type> >::type,
> boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type>
> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0,
> TN>::operator=(const T&) [with T = float; T0_ =
> std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]’ at
> /usr/include/boost/variant/variant.hpp:2160:15,
> inlined from ‘void ost::GenericPropContainer<H>::SetFloatProp(const
> String&, Real) [with H = ost::mol::AtomBase]’ at
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38,
> inlined from ‘ost::mol::EntityHandle make_query_test_entity()’ at
> /<<PKGBUILDDIR>>/modules/mol/base/tests/test_query.cc:40:18:
> /usr/include/c++/13/bits/basic_string.h:266:17: warning: ‘*(const
> std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char>
> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, float, int, bool,
> geom::Vec3>,boost::variant<std::__cxx11::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, float, int, bool,
> geom::Vec3>::storage_.boost::aligned_storage<32,
> 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32,
> 8>::data_)).std::__cxx11::basic_string<char>::_M_string_length’ may be used
> uninitialized [-Wmaybe-uninitialized]
> 266 | if (_M_string_length > _S_local_capacity)
> | ^~~~~~~~~~~~~~~~
> /usr/include/boost/variant/variant.hpp: In function ‘ost::mol::EntityHandle
> make_query_test_entity()’:
> /usr/include/boost/variant/variant.hpp:2107:21: note: ‘temp’ declared here
> 2107 | variant temp(rhs);
> | ^~~~
> In member function ‘std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&
> std::__cxx11::basic_string<_CharT, _Traits,
> _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&)
> [with _CharT = char; _Traits = std::char_traits<char>; _Alloc =
> std::allocator<char>]’,
> inlined from ‘void
> boost::detail::variant::move_storage::internal_visit(T&, int) const [with T =
> std::__cxx11::basic_string<char>]’ at
> /usr/include/boost/variant/variant.hpp:597:21,
> inlined from ‘typename Visitor::result_type
> boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV,
> T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T =
> std::__cxx11::basic_string<char>]’ at
> /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
> inlined from ‘typename Visitor::result_type
> boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*,
> NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T =
> std::__cxx11::basic_string<char>; NoBackupFlag =
> boost::variant<std::__cxx11::basic_string<char>, float, int, bool,
> geom::Vec3>::has_fallback_type_]’ at
> /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
> inlined from ‘typename Visitor::result_type
> boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV,
> mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>;
> step0 =
> visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>,
> std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float,
> boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>,
> bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > >
> > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage;
> VoidPtrCV = void*; NoBackupFlag =
> boost::variant<std::__cxx11::basic_string<char>, float, int, bool,
> geom::Vec3>::has_fallback_type_]’ at
> /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
> inlined from ‘static typename Visitor::result_type boost::variant<T0,
> TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor
> = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ =
> std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]’ at
> /usr/include/boost/variant/variant.hpp:2338:48,
> inlined from ‘typename Visitor::result_type boost::variant<T0,
> TN>::internal_apply_visitor(Visitor&) [with Visitor =
> boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>;
> TN = {float, int, bool, geom::Vec3}]’ at
> /usr/include/boost/variant/variant.hpp:2350:43,
> inlined from ‘void boost::variant<T0,
> TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ =
> std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]’ at
> /usr/include/boost/variant/variant.hpp:2081:41,
> inlined from ‘void boost::variant<T0, TN>::assign(const T&) [with T =
> float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool,
> geom::Vec3}]’ at /usr/include/boost/variant/variant.hpp:2108:27,
> inlined from ‘void boost::variant<T0, TN>::assign(const T&) [with T =
> float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool,
> geom::Vec3}]’ at /usr/include/boost/variant/variant.hpp:2095:10,
> inlined from ‘typename boost::enable_if<boost::mpl::or_<boost::is_same<T,
> boost::variant<T0, TN> >,
> boost::detail::variant::is_variant_constructible_from<const T&, typename
> boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0,
> TN>::is_recursive_, boost::mpl::transform<typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_,
> boost::mpl::identity<T> >::type,
> boost::detail::variant::make_variant_list<typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_,
> boost::mpl::identity<T> >::type, TN ...> >::type,
> boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0,
> TN> > > >, boost::mpl::identity<typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_,
> boost::mpl::identity<T> >::type,
> boost::detail::variant::make_variant_list<typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_,
> boost::mpl::identity<T> >::type, TN ...> >::type> >::type,
> boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type>
> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0,
> TN>::operator=(const T&) [with T = float; T0_ =
> std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]’ at
> /usr/include/boost/variant/variant.hpp:2160:15,
> inlined from ‘void ost::GenericPropContainer<H>::SetFloatProp(const
> String&, Real) [with H = ost::mol::AtomBase]’ at
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38,
> inlined from ‘ost::mol::EntityHandle make_query_test_entity()’ at
> /<<PKGBUILDDIR>>/modules/mol/base/tests/test_query.cc:40:18:
> /usr/include/c++/13/bits/basic_string.h:900:24: warning:
> ‘*(std::__cxx11::basic_string<char, std::char_traits<char>,
> std::allocator<char> >*)((char*)&temp +
> offsetof(boost::variant<std::__cxx11::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, float, int, bool,
> geom::Vec3>,boost::variant<std::__cxx11::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, float, int, bool,
> geom::Vec3>::storage_.boost::aligned_storage<32,
> 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32,
> 8>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed
> union>::_M_allocated_capacity’ may be used uninitialized
> [-Wmaybe-uninitialized]
> 900 | _M_capacity(__str._M_allocated_capacity);
> | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /usr/include/boost/variant/variant.hpp: In function ‘ost::mol::EntityHandle
> make_query_test_entity()’:
> /usr/include/boost/variant/variant.hpp:2107:21: note: ‘temp’ declared here
> 2107 | variant temp(rhs);
> | ^~~~
> In static member function ‘static constexpr void
> std::char_traits<char>::assign(char_type&, const char_type&)’,
> inlined from ‘static void std::__cxx11::basic_string<_CharT, _Traits,
> _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char;
> _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]’ at
> /usr/include/c++/13/bits/basic_string.h:428:23,
> inlined from ‘std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&
> std::__cxx11::basic_string<_CharT, _Traits,
> _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&)
> [with _CharT = char; _Traits = std::char_traits<char>; _Alloc =
> std::allocator<char>]’ at /usr/include/c++/13/bits/basic_string.h:877:18,
> inlined from ‘void
> boost::detail::variant::move_storage::internal_visit(T&, int) const [with T =
> std::__cxx11::basic_string<char>]’ at
> /usr/include/boost/variant/variant.hpp:597:21,
> inlined from ‘typename Visitor::result_type
> boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV,
> T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T =
> std::__cxx11::basic_string<char>]’ at
> /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
> inlined from ‘typename Visitor::result_type
> boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*,
> NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T =
> std::__cxx11::basic_string<char>; NoBackupFlag =
> boost::variant<std::__cxx11::basic_string<char>, float, int, bool,
> geom::Vec3>::has_fallback_type_]’ at
> /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
> inlined from ‘typename Visitor::result_type
> boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV,
> mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>;
> step0 =
> visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>,
> std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float,
> boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>,
> bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > >
> > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage;
> VoidPtrCV = void*; NoBackupFlag =
> boost::variant<std::__cxx11::basic_string<char>, float, int, bool,
> geom::Vec3>::has_fallback_type_]’ at
> /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
> inlined from ‘static typename Visitor::result_type boost::variant<T0,
> TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor
> = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ =
> std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]’ at
> /usr/include/boost/variant/variant.hpp:2338:48,
> inlined from ‘typename Visitor::result_type boost::variant<T0,
> TN>::internal_apply_visitor(Visitor&) [with Visitor =
> boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>;
> TN = {float, int, bool, geom::Vec3}]’ at
> /usr/include/boost/variant/variant.hpp:2350:43,
> inlined from ‘void boost::variant<T0,
> TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ =
> std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]’ at
> /usr/include/boost/variant/variant.hpp:2081:41,
> inlined from ‘void boost::variant<T0, TN>::assign(const T&) [with T =
> float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool,
> geom::Vec3}]’ at /usr/include/boost/variant/variant.hpp:2108:27,
> inlined from ‘void boost::variant<T0, TN>::assign(const T&) [with T =
> float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool,
> geom::Vec3}]’ at /usr/include/boost/variant/variant.hpp:2095:10,
> inlined from ‘typename boost::enable_if<boost::mpl::or_<boost::is_same<T,
> boost::variant<T0, TN> >,
> boost::detail::variant::is_variant_constructible_from<const T&, typename
> boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0,
> TN>::is_recursive_, boost::mpl::transform<typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_,
> boost::mpl::identity<T> >::type,
> boost::detail::variant::make_variant_list<typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_,
> boost::mpl::identity<T> >::type, TN ...> >::type,
> boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0,
> TN> > > >, boost::mpl::identity<typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_,
> boost::mpl::identity<T> >::type,
> boost::detail::variant::make_variant_list<typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_,
> boost::mpl::identity<T> >::type, TN ...> >::type> >::type,
> boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type>
> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0,
> TN>::operator=(const T&) [with T = float; T0_ =
> std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]’ at
> /usr/include/boost/variant/variant.hpp:2160:15,
> inlined from ‘void ost::GenericPropContainer<H>::SetFloatProp(const
> String&, Real) [with H = ost::mol::AtomBase]’ at
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38,
> inlined from ‘ost::mol::EntityHandle make_query_test_entity()’ at
> /<<PKGBUILDDIR>>/modules/mol/base/tests/test_query.cc:40:18:
> /usr/include/c++/13/bits/char_traits.h:358:16: warning: ‘((const
> std::char_traits<char>::char_type*)((char*)&temp +
> offsetof(boost::variant<std::__cxx11::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, float, int, bool,
> geom::Vec3>,boost::variant<std::__cxx11::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, float, int, bool,
> geom::Vec3>::storage_.boost::aligned_storage<32,
> 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32,
> 8>::data_)))[16]’ may be used uninitialized [-Wmaybe-uninitialized]
> 358 | __c1 = __c2;
> | ^~~~
> /usr/include/boost/variant/variant.hpp: In function ‘ost::mol::EntityHandle
> make_query_test_entity()’:
> /usr/include/boost/variant/variant.hpp:2107:21: note: ‘temp’ declared here
> 2107 | variant temp(rhs);
> | ^~~~
> In member function ‘std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&
> std::__cxx11::basic_string<_CharT, _Traits,
> _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&)
> [with _CharT = char; _Traits = std::char_traits<char>; _Alloc =
> std::allocator<char>]’,
> inlined from ‘void
> boost::detail::variant::move_storage::internal_visit(T&, int) const [with T =
> std::__cxx11::basic_string<char>]’ at
> /usr/include/boost/variant/variant.hpp:597:21,
> inlined from ‘typename Visitor::result_type
> boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV,
> T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T =
> std::__cxx11::basic_string<char>]’ at
> /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
> inlined from ‘typename Visitor::result_type
> boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*,
> NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T =
> std::__cxx11::basic_string<char>; NoBackupFlag =
> boost::variant<std::__cxx11::basic_string<char>, float, int, bool,
> geom::Vec3>::has_fallback_type_]’ at
> /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
> inlined from ‘typename Visitor::result_type
> boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV,
> mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>;
> step0 =
> visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>,
> std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float,
> boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>,
> bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > >
> > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage;
> VoidPtrCV = void*; NoBackupFlag =
> boost::variant<std::__cxx11::basic_string<char>, float, int, bool,
> geom::Vec3>::has_fallback_type_]’ at
> /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
> inlined from ‘static typename Visitor::result_type boost::variant<T0,
> TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor
> = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ =
> std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]’ at
> /usr/include/boost/variant/variant.hpp:2338:48,
> inlined from ‘typename Visitor::result_type boost::variant<T0,
> TN>::internal_apply_visitor(Visitor&) [with Visitor =
> boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>;
> TN = {float, int, bool, geom::Vec3}]’ at
> /usr/include/boost/variant/variant.hpp:2350:43,
> inlined from ‘void boost::variant<T0,
> TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ =
> std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]’ at
> /usr/include/boost/variant/variant.hpp:2081:41,
> inlined from ‘void boost::variant<T0, TN>::assign(const T&) [with T =
> float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool,
> geom::Vec3}]’ at /usr/include/boost/variant/variant.hpp:2108:27,
> inlined from ‘void boost::variant<T0, TN>::assign(const T&) [with T =
> float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool,
> geom::Vec3}]’ at /usr/include/boost/variant/variant.hpp:2095:10,
> inlined from ‘typename boost::enable_if<boost::mpl::or_<boost::is_same<T,
> boost::variant<T0, TN> >,
> boost::detail::variant::is_variant_constructible_from<const T&, typename
> boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0,
> TN>::is_recursive_, boost::mpl::transform<typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_,
> boost::mpl::identity<T> >::type,
> boost::detail::variant::make_variant_list<typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_,
> boost::mpl::identity<T> >::type, TN ...> >::type,
> boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0,
> TN> > > >, boost::mpl::identity<typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_,
> boost::mpl::identity<T> >::type,
> boost::detail::variant::make_variant_list<typename
> boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_,
> boost::mpl::identity<T> >::type, TN ...> >::type> >::type,
> boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type>
> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0,
> TN>::operator=(const T&) [with T = float; T0_ =
> std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]’ at
> /usr/include/boost/variant/variant.hpp:2160:15,
> inlined from ‘void ost::GenericPropContainer<H>::SetFloatProp(const
> String&, Real) [with H = ost::mol::ChainBase]’ at
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/generic_property.hh:358:38,
> inlined from ‘ost::mol::EntityHandle make_query_test_entity()’ at
> /<<PKGBUILDDIR>>/modules/mol/base/tests/test_query.cc:36:21:
> /usr/include/c++/13/bits/basic_string.h:900:24: warning:
> ‘*(std::__cxx11::basic_string<char, std::char_traits<char>,
> std::allocator<char> >*)((char*)&temp +
> offsetof(boost::variant<std::__cxx11::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, float, int, bool,
> geom::Vec3>,boost::variant<std::__cxx11::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, float, int, bool,
> geom::Vec3>::storage_.boost::aligned_storage<32,
> 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32,
> 8>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed
> union>::_M_allocated_capacity’ may be used uninitialized
> [-Wmaybe-uninitialized]
> 900 | _M_capacity(__str._M_allocated_capacity);
> | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /usr/include/boost/variant/variant.hpp: In function ‘ost::mol::EntityHandle
> make_query_test_entity()’:
> /usr/include/boost/variant/variant.hpp:2107:21: note: ‘temp’ declared here
> 2107 | variant temp(rhs);
> | ^~~~
> ......................................In file included from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/composite2.hh:27,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/composite.hh:22,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/geom.hh:28,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/img/vecmat.hh:33,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/img/point.hh:35,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/img/image.hh:34,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/img/map.hh:22,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/io/img/load_map.hh:24,
> from /<<PKGBUILDDIR>>/modules/io/tests/test_io_img.cc:29:
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:25:41:
> warning: ‘template<class _Category, class _Tp, class _Distance, class
> _Pointer, class _Reference> struct std::iterator’ is deprecated
> [-Wdeprecated-declarations]
> 25 | class const_circular_iter : public
> std::iterator<std::bidirectional_iterator_tag,typename T::value_type>
> | ^~~~~~~~
> In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66,
> from /usr/include/c++/13/string:47,
> from
> /usr/include/boost/test/utils/basic_cstring/bcs_char_traits.hpp:25,
> from
> /usr/include/boost/test/utils/basic_cstring/basic_cstring.hpp:21,
> from /usr/include/boost/test/detail/global_typedef.hpp:15,
> from
> /usr/include/boost/test/tools/detail/print_helper.hpp:20,
> from /usr/include/boost/test/utils/lazy_ostream.hpp:16,
> from /usr/include/boost/test/tools/context.hpp:19,
> from /usr/include/boost/test/test_tools.hpp:42,
> from /usr/include/boost/test/unit_test.hpp:18,
> from /<<PKGBUILDDIR>>/modules/io/tests/test_io_img.cc:20:
> /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
> 127 | struct _GLIBCXX17_DEPRECATED iterator
> | ^~~~~~~~
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:100:35:
> warning: ‘template<class _Category, class _Tp, class _Distance, class
> _Pointer, class _Reference> struct std::iterator’ is deprecated
> [-Wdeprecated-declarations]
> 100 | class circular_iter : public
> std::iterator<std::bidirectional_iterator_tag,typename T::value_type>
> | ^~~~~~~~
> /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
> 127 | struct _GLIBCXX17_DEPRECATED iterator
> | ^~~~~~~~
> /usr/lib/python3.11/unittest/case.py:579: ResourceWarning: unclosed file
> <_io.BufferedReader
> name='/<<PKGBUILDDIR>>/modules/base/tests/testfiles/enrichment-out.png'>
> if method() is not None:
> ResourceWarning: Enable tracemalloc to get the object allocation traceback
> ../usr/lib/python3.11/unittest/case.py:579: ResourceWarning: unclosed file
> <_io.BufferedReader
> name='/<<PKGBUILDDIR>>/modules/base/tests/testfiles/roc-out.png'>
> if method() is not None:
> ResourceWarning: Enable tracemalloc to get the object allocation traceback
> ./usr/lib/python3.11/unittest/case.py:579: ResourceWarning: unclosed file
> <_io.BufferedReader
> name='/<<PKGBUILDDIR>>/modules/base/tests/testfiles/roc-same-val-out.png'>
> if method() is not None:
> ResourceWarning: Enable tracemalloc to get the object allocation traceback
> .................E........................
> ======================================================================
> ERROR: testSpearmanCorrel (__main__.TestTable.testSpearmanCorrel)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File "/<<PKGBUILDDIR>>/modules/base/tests/test_table.py", line 1668, in
> testSpearmanCorrel
> self.assertAlmostEqual(tab.SpearmanCorrel('second','third'), -0.316227766)
> File "/usr/lib/python3.11/unittest/case.py", line 904, in assertAlmostEqual
> diff = abs(first - second)
> ~~~~~~^~~~~~~~
> TypeError: unsupported operand type(s) for -: 'NoneType' and 'float'
>
> ----------------------------------------------------------------------
> Ran 83 tests in 1.790s
>
> FAILED (errors=1)
> make[4]: ***
> [modules/base/tests/CMakeFiles/test_table.py_run.dir/build.make:74:
> modules/base/tests/CMakeFiles/test_table.py_run] Error 1
> make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
> make[3]: *** [CMakeFiles/Makefile2:2070:
> modules/base/tests/CMakeFiles/test_table.py_run.dir/all] Error 2
> make[3]: *** Waiting for unfinished jobs....
> [ 95%] Building CXX object
> modules/io/tests/CMakeFiles/ost_io_tests.dir/test_exceptions.cc.o
> cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/modules/io/tests && /usr/bin/c++
> -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK
> -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB
> -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB
> -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK
> -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB
> -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB
> -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB
> -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3
> -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem
> /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem
> /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem
> /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem
> /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem
> /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2
> -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
> -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
> -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG
> -fno-strict-aliasing -fPIC -MD -MT
> modules/io/tests/CMakeFiles/ost_io_tests.dir/test_exceptions.cc.o -MF
> CMakeFiles/ost_io_tests.dir/test_exceptions.cc.o.d -o
> CMakeFiles/ost_io_tests.dir/test_exceptions.cc.o -c
> /<<PKGBUILDDIR>>/modules/io/tests/test_exceptions.cc
> [ 95%] Building CXX object
> modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_block_modifiers.cc.o
> cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/modules/mol/mm/tests && /usr/bin/c++
> -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK
> -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB
> -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB
> -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK
> -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB
> -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB
> -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB
> -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3
> -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem
> /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem
> /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem
> /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem
> /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem
> /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2
> -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
> -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
> -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG
> -fno-strict-aliasing -fPIC -MD -MT
> modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_block_modifiers.cc.o
> -MF CMakeFiles/ost_mol_mm_tests.dir/test_block_modifiers.cc.o.d -o
> CMakeFiles/ost_mol_mm_tests.dir/test_block_modifiers.cc.o -c
> /<<PKGBUILDDIR>>/modules/mol/mm/tests/test_block_modifiers.cc
> [ 95%] Building CXX object
> modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_surface.cc.o
> cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/modules/mol/base/tests &&
> /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB
> -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK
> -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB
> -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB
> -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB
> -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3
> -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem
> /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem
> /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem
> /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem
> /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem
> /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2
> -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
> -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
> -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG
> -fno-strict-aliasing -fPIC -MD -MT
> modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_surface.cc.o -MF
> CMakeFiles/ost_mol_tests.dir/test_surface.cc.o.d -o
> CMakeFiles/ost_mol_tests.dir/test_surface.cc.o -c
> /<<PKGBUILDDIR>>/modules/mol/base/tests/test_surface.cc
> [ 95%] Building CXX object
> modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_topology.cc.o
> cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/modules/mol/mm/tests && /usr/bin/c++
> -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK
> -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB
> -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB
> -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK
> -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB
> -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB
> -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB
> -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3
> -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem
> /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem
> /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem
> /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem
> /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem
> /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2
> -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
> -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
> -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG
> -fno-strict-aliasing -fPIC -MD -MT
> modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_topology.cc.o -MF
> CMakeFiles/ost_mol_mm_tests.dir/test_topology.cc.o.d -o
> CMakeFiles/ost_mol_mm_tests.dir/test_topology.cc.o -c
> /<<PKGBUILDDIR>>/modules/mol/mm/tests/test_topology.cc
> [ 95%] Building CXX object
> modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/tests.cc.o
> cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/modules/seq/alg/tests &&
> /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB
> -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB
> -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB
> -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB
> -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK
> -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB
> -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB
> -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB
> -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3
> -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem
> /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem
> /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem
> /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem
> /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem
> /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2
> -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
> -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
> -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG
> -fno-strict-aliasing -fPIC -MD -MT
> modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/tests.cc.o -MF
> CMakeFiles/ost_seq_alg_tests.dir/tests.cc.o.d -o
> CMakeFiles/ost_seq_alg_tests.dir/tests.cc.o -c
> /<<PKGBUILDDIR>>/modules/seq/alg/tests/tests.cc
> In file included from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/composite2.hh:27,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/composite.hh:22,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/geom.hh:28,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/img/vecmat.hh:33,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/img/point.hh:35,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/img/image.hh:34,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/img/map.hh:22,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/io/img/load_map.hh:24,
> from /<<PKGBUILDDIR>>/modules/io/tests/test_exceptions.cc:27:
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:25:41:
> warning: ‘template<class _Category, class _Tp, class _Distance, class
> _Pointer, class _Reference> struct std::iterator’ is deprecated
> [-Wdeprecated-declarations]
> 25 | class const_circular_iter : public
> std::iterator<std::bidirectional_iterator_tag,typename T::value_type>
> | ^~~~~~~~
> In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66,
> from /usr/include/c++/13/string:47,
> from
> /usr/include/boost/test/utils/basic_cstring/bcs_char_traits.hpp:25,
> from
> /usr/include/boost/test/utils/basic_cstring/basic_cstring.hpp:21,
> from /usr/include/boost/test/detail/global_typedef.hpp:15,
> from
> /usr/include/boost/test/tools/detail/print_helper.hpp:20,
> from /usr/include/boost/test/utils/lazy_ostream.hpp:16,
> from /usr/include/boost/test/tools/context.hpp:19,
> from /usr/include/boost/test/test_tools.hpp:42,
> from /usr/include/boost/test/unit_test.hpp:18,
> from /<<PKGBUILDDIR>>/modules/io/tests/test_exceptions.cc:25:
> /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
> 127 | struct _GLIBCXX17_DEPRECATED iterator
> | ^~~~~~~~
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:100:35:
> warning: ‘template<class _Category, class _Tp, class _Distance, class
> _Pointer, class _Reference> struct std::iterator’ is deprecated
> [-Wdeprecated-declarations]
> 100 | class circular_iter : public
> std::iterator<std::bidirectional_iterator_tag,typename T::value_type>
> | ^~~~~~~~
> /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
> 127 | struct _GLIBCXX17_DEPRECATED iterator
> | ^~~~~~~~
> In file included from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/composite2.hh:27,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/composite.hh:22,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/geom.hh:28,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/mol/query_state.hh:26,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/mol/query.hh:39,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/mol/residue_handle.hh:25,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/interaction.hh:34,
> from
> /<<PKGBUILDDIR>>/modules/mol/mm/tests/test_block_modifiers.cc:21:
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:25:41:
> warning: ‘template<class _Category, class _Tp, class _Distance, class
> _Pointer, class _Reference> struct std::iterator’ is deprecated
> [-Wdeprecated-declarations]
> 25 | class const_circular_iter : public
> std::iterator<std::bidirectional_iterator_tag,typename T::value_type>
> | ^~~~~~~~
> In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66,
> from /usr/include/c++/13/string:47,
> from
> /usr/include/boost/test/utils/basic_cstring/bcs_char_traits.hpp:25,
> from
> /usr/include/boost/test/utils/basic_cstring/basic_cstring.hpp:21,
> from /usr/include/boost/test/detail/global_typedef.hpp:15,
> from
> /usr/include/boost/test/tools/detail/print_helper.hpp:20,
> from /usr/include/boost/test/utils/lazy_ostream.hpp:16,
> from /usr/include/boost/test/tools/context.hpp:19,
> from /usr/include/boost/test/test_tools.hpp:42,
> from /usr/include/boost/test/unit_test.hpp:18,
> from
> /<<PKGBUILDDIR>>/modules/mol/mm/tests/test_block_modifiers.cc:20:
> /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
> 127 | struct _GLIBCXX17_DEPRECATED iterator
> | ^~~~~~~~
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:100:35:
> warning: ‘template<class _Category, class _Tp, class _Distance, class
> _Pointer, class _Reference> struct std::iterator’ is deprecated
> [-Wdeprecated-declarations]
> 100 | class circular_iter : public
> std::iterator<std::bidirectional_iterator_tag,typename T::value_type>
> | ^~~~~~~~
> /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
> 127 | struct _GLIBCXX17_DEPRECATED iterator
> | ^~~~~~~~
> [ 95%] Building CXX object
> modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_forcefield.cc.o
> cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/modules/mol/mm/tests && /usr/bin/c++
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> CMakeFiles/ost_mol_mm_tests.dir/test_forcefield.cc.o.d -o
> CMakeFiles/ost_mol_mm_tests.dir/test_forcefield.cc.o -c
> /<<PKGBUILDDIR>>/modules/mol/mm/tests/test_forcefield.cc
> In file included from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/composite2.hh:27,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/composite.hh:22,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/geom.hh:28,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/mol/surface_prop.hh:25,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/mol/surface_handle.hh:24,
> from
> /<<PKGBUILDDIR>>/modules/mol/base/tests/test_surface.cc:23:
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:25:41:
> warning: ‘template<class _Category, class _Tp, class _Distance, class
> _Pointer, class _Reference> struct std::iterator’ is deprecated
> [-Wdeprecated-declarations]
> 25 | class const_circular_iter : public
> std::iterator<std::bidirectional_iterator_tag,typename T::value_type>
> | ^~~~~~~~
> In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66,
> from /usr/include/c++/13/string:47,
> from
> /usr/include/boost/test/utils/basic_cstring/bcs_char_traits.hpp:25,
> from
> /usr/include/boost/test/utils/basic_cstring/basic_cstring.hpp:21,
> from /usr/include/boost/test/detail/global_typedef.hpp:15,
> from
> /usr/include/boost/test/tools/detail/print_helper.hpp:20,
> from /usr/include/boost/test/utils/lazy_ostream.hpp:16,
> from /usr/include/boost/test/tools/context.hpp:19,
> from /usr/include/boost/test/test_tools.hpp:42,
> from /usr/include/boost/test/unit_test.hpp:18,
> from
> /<<PKGBUILDDIR>>/modules/mol/base/tests/test_surface.cc:21:
> /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
> 127 | struct _GLIBCXX17_DEPRECATED iterator
> | ^~~~~~~~
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:100:35:
> warning: ‘template<class _Category, class _Tp, class _Distance, class
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> [-Wdeprecated-declarations]
> 100 | class circular_iter : public
> std::iterator<std::bidirectional_iterator_tag,typename T::value_type>
> | ^~~~~~~~
> /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
> 127 | struct _GLIBCXX17_DEPRECATED iterator
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> [ 95%] Linking CXX executable ../../../../tests/ost_seq_alg_tests
> cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/modules/seq/alg/tests &&
> /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_seq_alg_tests.dir/link.txt
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> /<<PKGBUILDDIR>>/modules/mol/mm/tests/test_topology.cc:21:
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:25:41:
> warning: ‘template<class _Category, class _Tp, class _Distance, class
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> 25 | class const_circular_iter : public
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> In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66,
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> /usr/include/boost/test/utils/basic_cstring/bcs_char_traits.hpp:25,
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> from /usr/include/boost/test/detail/global_typedef.hpp:15,
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> from /usr/include/boost/test/unit_test.hpp:18,
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> /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
> 127 | struct _GLIBCXX17_DEPRECATED iterator
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> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:100:35:
> warning: ‘template<class _Category, class _Tp, class _Distance, class
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> 100 | class circular_iter : public
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> /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
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> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/composite.hh:22,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/geom.hh:28,
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> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/mol/query_state.hh:26,
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> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/mol/query.hh:39,
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> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/mol/residue_handle.hh:25,
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> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/settings.hh:31,
> from
> /<<PKGBUILDDIR>>/modules/mol/mm/tests/test_forcefield.cc:21:
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:25:41:
> warning: ‘template<class _Category, class _Tp, class _Distance, class
> _Pointer, class _Reference> struct std::iterator’ is deprecated
> [-Wdeprecated-declarations]
> 25 | class const_circular_iter : public
> std::iterator<std::bidirectional_iterator_tag,typename T::value_type>
> | ^~~~~~~~
> In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66,
> from /usr/include/c++/13/string:47,
> from
> /usr/include/boost/test/utils/basic_cstring/bcs_char_traits.hpp:25,
> from
> /usr/include/boost/test/utils/basic_cstring/basic_cstring.hpp:21,
> from /usr/include/boost/test/detail/global_typedef.hpp:15,
> from
> /usr/include/boost/test/tools/detail/print_helper.hpp:20,
> from /usr/include/boost/test/utils/lazy_ostream.hpp:16,
> from /usr/include/boost/test/tools/context.hpp:19,
> from /usr/include/boost/test/test_tools.hpp:42,
> from /usr/include/boost/test/unit_test.hpp:18,
> from
> /<<PKGBUILDDIR>>/modules/mol/mm/tests/test_forcefield.cc:20:
> /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
> 127 | struct _GLIBCXX17_DEPRECATED iterator
> | ^~~~~~~~
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:100:35:
> warning: ‘template<class _Category, class _Tp, class _Distance, class
> _Pointer, class _Reference> struct std::iterator’ is deprecated
> [-Wdeprecated-declarations]
> 100 | class circular_iter : public
> std::iterator<std::bidirectional_iterator_tag,typename T::value_type>
> | ^~~~~~~~
> /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
> 127 | struct _GLIBCXX17_DEPRECATED iterator
> | ^~~~~~~~
> In file included from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/seq/sequence_list.hh:23,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/pdb_reader.hh:28,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/modeller.hh:28,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/topology_creator.hh:37,
> from
> /<<PKGBUILDDIR>>/modules/mol/mm/tests/test_topology.cc:22:
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_list_iterator.hh:32:17:
> warning: ‘template<class _Category, class _Tp, class _Distance, class
> _Pointer, class _Reference> struct std::iterator’ is deprecated
> [-Wdeprecated-declarations]
> 32 | : public std::iterator<std::random_access_iterator_tag, T>{
> | ^~~~~~~~
> /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
> 127 | struct _GLIBCXX17_DEPRECATED iterator
> | ^~~~~~~~
> [ 96%] Building CXX object
> modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_transfer_connectivity.cc.o
> cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/modules/mol/base/tests &&
> /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB
> -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK
> -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB
> -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB
> -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB
> -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3
> -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem
> /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem
> /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem
> /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem
> /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem
> /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2
> -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
> -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
> -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG
> -fno-strict-aliasing -fPIC -MD -MT
> modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_transfer_connectivity.cc.o
> -MF CMakeFiles/ost_mol_tests.dir/test_transfer_connectivity.cc.o.d -o
> CMakeFiles/ost_mol_tests.dir/test_transfer_connectivity.cc.o -c
> /<<PKGBUILDDIR>>/modules/mol/base/tests/test_transfer_connectivity.cc
> In file included from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/composite2.hh:27,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/composite.hh:22,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/geom.hh:28,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/mol/query_state.hh:26,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/mol/query.hh:39,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/mol/entity_handle.hh:26,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/mol/mol.hh:22,
> from
> /<<PKGBUILDDIR>>/modules/mol/base/tests/test_residue.cc:24:
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:25:41:
> warning: ‘template<class _Category, class _Tp, class _Distance, class
> _Pointer, class _Reference> struct std::iterator’ is deprecated
> [-Wdeprecated-declarations]
> 25 | class const_circular_iter : public
> std::iterator<std::bidirectional_iterator_tag,typename T::value_type>
> | ^~~~~~~~
> In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66,
> from /usr/include/c++/13/string:47,
> from
> /usr/include/boost/test/utils/basic_cstring/bcs_char_traits.hpp:25,
> from
> /usr/include/boost/test/utils/basic_cstring/basic_cstring.hpp:21,
> from /usr/include/boost/test/detail/global_typedef.hpp:15,
> from
> /usr/include/boost/test/tools/detail/print_helper.hpp:20,
> from /usr/include/boost/test/utils/lazy_ostream.hpp:16,
> from /usr/include/boost/test/tools/context.hpp:19,
> from /usr/include/boost/test/test_tools.hpp:42,
> from /usr/include/boost/test/unit_test.hpp:18,
> from
> /<<PKGBUILDDIR>>/modules/mol/base/tests/test_residue.cc:23:
> /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
> 127 | struct _GLIBCXX17_DEPRECATED iterator
> | ^~~~~~~~
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:100:35:
> warning: ‘template<class _Category, class _Tp, class _Distance, class
> _Pointer, class _Reference> struct std::iterator’ is deprecated
> [-Wdeprecated-declarations]
> 100 | class circular_iter : public
> std::iterator<std::bidirectional_iterator_tag,typename T::value_type>
> | ^~~~~~~~
> /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
> 127 | struct _GLIBCXX17_DEPRECATED iterator
> | ^~~~~~~~
> In file included from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/composite2.hh:27,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/composite.hh:22,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/geom.hh:28,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/mol/query_state.hh:26,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/mol/query.hh:39,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/mol/residue_handle.hh:25,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/settings.hh:31,
> from
> /<<PKGBUILDDIR>>/modules/mol/mm/tests/test_simulation.cc:21:
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:25:41:
> warning: ‘template<class _Category, class _Tp, class _Distance, class
> _Pointer, class _Reference> struct std::iterator’ is deprecated
> [-Wdeprecated-declarations]
> 25 | class const_circular_iter : public
> std::iterator<std::bidirectional_iterator_tag,typename T::value_type>
> | ^~~~~~~~
> In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66,
> from /usr/include/c++/13/string:47,
> from
> /usr/include/boost/test/utils/basic_cstring/bcs_char_traits.hpp:25,
> from
> /usr/include/boost/test/utils/basic_cstring/basic_cstring.hpp:21,
> from /usr/include/boost/test/detail/global_typedef.hpp:15,
> from
> /usr/include/boost/test/tools/detail/print_helper.hpp:20,
> from /usr/include/boost/test/utils/lazy_ostream.hpp:16,
> from /usr/include/boost/test/tools/context.hpp:19,
> from /usr/include/boost/test/test_tools.hpp:42,
> from /usr/include/boost/test/unit_test.hpp:18,
> from
> /<<PKGBUILDDIR>>/modules/mol/mm/tests/test_simulation.cc:20:
> /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
> 127 | struct _GLIBCXX17_DEPRECATED iterator
> | ^~~~~~~~
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:100:35:
> warning: ‘template<class _Category, class _Tp, class _Distance, class
> _Pointer, class _Reference> struct std::iterator’ is deprecated
> [-Wdeprecated-declarations]
> 100 | class circular_iter : public
> std::iterator<std::bidirectional_iterator_tag,typename T::value_type>
> | ^~~~~~~~
> /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
> 127 | struct _GLIBCXX17_DEPRECATED iterator
> | ^~~~~~~~
> In file included from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/composite2.hh:27,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/composite.hh:22,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/geom.hh:28,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/mol/query_state.hh:26,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/mol/query.hh:39,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/mol/entity_handle.hh:26,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/mol/mol.hh:22,
> from /<<PKGBUILDDIR>>/modules/mol/base/tests/test_view.cc:24:
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:25:41:
> warning: ‘template<class _Category, class _Tp, class _Distance, class
> _Pointer, class _Reference> struct std::iterator’ is deprecated
> [-Wdeprecated-declarations]
> 25 | class const_circular_iter : public
> std::iterator<std::bidirectional_iterator_tag,typename T::value_type>
> | ^~~~~~~~
> In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66,
> from /usr/include/c++/13/string:47,
> from
> /usr/include/boost/test/utils/basic_cstring/bcs_char_traits.hpp:25,
> from
> /usr/include/boost/test/utils/basic_cstring/basic_cstring.hpp:21,
> from /usr/include/boost/test/detail/global_typedef.hpp:15,
> from
> /usr/include/boost/test/tools/detail/print_helper.hpp:20,
> from /usr/include/boost/test/utils/lazy_ostream.hpp:16,
> from /usr/include/boost/test/tools/context.hpp:19,
> from /usr/include/boost/test/test_tools.hpp:42,
> from /usr/include/boost/test/unit_test.hpp:18,
> from /<<PKGBUILDDIR>>/modules/mol/base/tests/test_view.cc:23:
> /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
> 127 | struct _GLIBCXX17_DEPRECATED iterator
> | ^~~~~~~~
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:100:35:
> warning: ‘template<class _Category, class _Tp, class _Distance, class
> _Pointer, class _Reference> struct std::iterator’ is deprecated
> [-Wdeprecated-declarations]
> 100 | class circular_iter : public
> std::iterator<std::bidirectional_iterator_tag,typename T::value_type>
> | ^~~~~~~~
> /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
> 127 | struct _GLIBCXX17_DEPRECATED iterator
> | ^~~~~~~~
> [ 96%] Building CXX object
> modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_view_op.cc.o
> cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/modules/mol/base/tests &&
> /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB
> -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK
> -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB
> -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB
> -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB
> -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3
> -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem
> /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem
> /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem
> /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem
> /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem
> /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2
> -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
> -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
> -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG
> -fno-strict-aliasing -fPIC -MD -MT
> modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_view_op.cc.o -MF
> CMakeFiles/ost_mol_tests.dir/test_view_op.cc.o.d -o
> CMakeFiles/ost_mol_tests.dir/test_view_op.cc.o -c
> /<<PKGBUILDDIR>>/modules/mol/base/tests/test_view_op.cc
> In file included from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/seq/sequence_list.hh:23,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/pdb_reader.hh:28,
> from
> /<<PKGBUILDDIR>>/modules/mol/mm/tests/test_simulation.cc:29:
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_list_iterator.hh:32:17:
> warning: ‘template<class _Category, class _Tp, class _Distance, class
> _Pointer, class _Reference> struct std::iterator’ is deprecated
> [-Wdeprecated-declarations]
> 32 | : public std::iterator<std::random_access_iterator_tag, T>{
> | ^~~~~~~~
> /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
> 127 | struct _GLIBCXX17_DEPRECATED iterator
> | ^~~~~~~~
> In file included from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/composite2.hh:27,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/composite.hh:22,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/geom.hh:28,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/mol/query_state.hh:26,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/mol/query.hh:39,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/mol/residue_handle.hh:25,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/mol/builder.hh:26,
> from
> /<<PKGBUILDDIR>>/modules/mol/base/tests/test_transfer_connectivity.cc:23:
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:25:41:
> warning: ‘template<class _Category, class _Tp, class _Distance, class
> _Pointer, class _Reference> struct std::iterator’ is deprecated
> [-Wdeprecated-declarations]
> 25 | class const_circular_iter : public
> std::iterator<std::bidirectional_iterator_tag,typename T::value_type>
> | ^~~~~~~~
> In file included from /usr/include/c++/13/bits/stl_algobase.h:65,
> from /usr/include/c++/13/bits/specfun.h:43,
> from /usr/include/c++/13/cmath:3699,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/base.hh:22,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/mol/module_config.hh:22,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/mol/builder.hh:23:
> /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
> 127 | struct _GLIBCXX17_DEPRECATED iterator
> | ^~~~~~~~
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:100:35:
> warning: ‘template<class _Category, class _Tp, class _Distance, class
> _Pointer, class _Reference> struct std::iterator’ is deprecated
> [-Wdeprecated-declarations]
> 100 | class circular_iter : public
> std::iterator<std::bidirectional_iterator_tag,typename T::value_type>
> | ^~~~~~~~
> /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
> 127 | struct _GLIBCXX17_DEPRECATED iterator
> | ^~~~~~~~
> In file included from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/composite2.hh:27,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/composite.hh:22,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/geom.hh:28,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/mol/query_state.hh:26,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/mol/query.hh:39,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/mol/entity_handle.hh:26,
> from
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/mol/mol.hh:22,
> from
> /<<PKGBUILDDIR>>/modules/mol/base/tests/test_view_op.cc:24:
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:25:41:
> warning: ‘template<class _Category, class _Tp, class _Distance, class
> _Pointer, class _Reference> struct std::iterator’ is deprecated
> [-Wdeprecated-declarations]
> 25 | class const_circular_iter : public
> std::iterator<std::bidirectional_iterator_tag,typename T::value_type>
> | ^~~~~~~~
> In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66,
> from /usr/include/c++/13/string:47,
> from
> /usr/include/boost/test/utils/basic_cstring/bcs_char_traits.hpp:25,
> from
> /usr/include/boost/test/utils/basic_cstring/basic_cstring.hpp:21,
> from /usr/include/boost/test/detail/global_typedef.hpp:15,
> from
> /usr/include/boost/test/tools/detail/print_helper.hpp:20,
> from /usr/include/boost/test/utils/lazy_ostream.hpp:16,
> from /usr/include/boost/test/tools/context.hpp:19,
> from /usr/include/boost/test/test_tools.hpp:42,
> from /usr/include/boost/test/unit_test.hpp:18,
> from
> /<<PKGBUILDDIR>>/modules/mol/base/tests/test_view_op.cc:23:
> /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
> 127 | struct _GLIBCXX17_DEPRECATED iterator
> | ^~~~~~~~
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:100:35:
> warning: ‘template<class _Category, class _Tp, class _Distance, class
> _Pointer, class _Reference> struct std::iterator’ is deprecated
> [-Wdeprecated-declarations]
> 100 | class circular_iter : public
> std::iterator<std::bidirectional_iterator_tag,typename T::value_type>
> | ^~~~~~~~
> /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
> 127 | struct _GLIBCXX17_DEPRECATED iterator
> | ^~~~~~~~
> [ 96%] Building CXX object
> modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/tests.cc.o
> cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/modules/mol/base/tests &&
> /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB
> -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK
> -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB
> -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB
> -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB
> -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3
> -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem
> /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem
> /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem
> /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem
> /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem
> /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2
> -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
> -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
> -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG
> -fno-strict-aliasing -fPIC -MD -MT
> modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/tests.cc.o -MF
> CMakeFiles/ost_mol_tests.dir/tests.cc.o.d -o
> CMakeFiles/ost_mol_tests.dir/tests.cc.o -c
> /<<PKGBUILDDIR>>/modules/mol/base/tests/tests.cc
> [ 96%] Linking CXX executable ../../../tests/ost_io_tests
> cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/modules/io/tests && /usr/bin/cmake
> -E cmake_link_script CMakeFiles/ost_io_tests.dir/link.txt --verbose=1
> /usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=.
> -fstack-protector-strong -fstack-clash-protection -Wformat
> -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall
> -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro
> CMakeFiles/ost_io_tests.dir/test_clustal.cc.o
> CMakeFiles/ost_io_tests.dir/test_io_pdb.cc.o
> CMakeFiles/ost_io_tests.dir/test_io_crd.cc.o
> CMakeFiles/ost_io_tests.dir/test_io_dcd.cc.o
> CMakeFiles/ost_io_tests.dir/test_io_sdf.cc.o
> CMakeFiles/ost_io_tests.dir/test_io_sequence_profile.cc.o
> CMakeFiles/ost_io_tests.dir/test_pir.cc.o
> CMakeFiles/ost_io_tests.dir/test_iomanager.cc.o
> CMakeFiles/ost_io_tests.dir/tests.cc.o
> CMakeFiles/ost_io_tests.dir/test_star_parser.cc.o
> CMakeFiles/ost_io_tests.dir/test_mmcif_reader.cc.o
> CMakeFiles/ost_io_tests.dir/test_mmcif_info.cc.o
> CMakeFiles/ost_io_tests.dir/test_io_img.cc.o
> CMakeFiles/ost_io_tests.dir/test_exceptions.cc.o -o
> ../../../tests/ost_io_tests
> -L/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/lib
> -Wl,-rpath,/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/lib
> /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0
> ../../../stage/lib/libost_io.so.2.5.0
> ../../../stage/lib/libost_mol_alg.so.2.5.0
> ../../../stage/lib/libost_conop.so.2.5.0
> ../../../stage/lib/libost_db.so.2.5.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so
> /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0
> /usr/lib/x86_64-linux-gnu/libboost_thread.so.1.83.0
> ../../../stage/lib/libost_seq_alg.so.2.5.0
> ../../../stage/lib/libost_seq.so.2.5.0 ../../../stage/lib/libost_mol.so.2.5.0
> ../../../stage/lib/libost_img_alg.so.2.5.0
> ../../../stage/lib/libost_img.so.2.5.0
> ../../../stage/lib/libost_info.so.2.5.0
> ../../../stage/lib/libost_base.so.2.5.0
> ../../../stage/lib/libost_geom.so.2.5.0
> /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0
> /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0
> /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0
> /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0
> /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.13
> /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.13
> /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.13
> /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13
> /usr/lib/x86_64-linux-gnu/libfftw3f.so
> /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so
> /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0
> /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so
> /usr/lib/x86_64-linux-gnu/libz.so
> make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
> [ 96%] Built target ost_io_tests
> [ 96%] Linking CXX executable ../../../../tests/ost_mol_tests
> cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/modules/mol/base/tests &&
> /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_mol_tests.dir/link.txt
> --verbose=1
> /usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=.
> -fstack-protector-strong -fstack-clash-protection -Wformat
> -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall
> -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro
> CMakeFiles/ost_mol_tests.dir/test_atom_groups.cc.o
> CMakeFiles/ost_mol_tests.dir/test_chain.cc.o
> CMakeFiles/ost_mol_tests.dir/test_conn.cc.o
> CMakeFiles/ost_mol_tests.dir/test_coord_group.cc.o
> CMakeFiles/ost_mol_tests.dir/test_builder.cc.o
> CMakeFiles/ost_mol_tests.dir/test_delete.cc.o
> CMakeFiles/ost_mol_tests.dir/test_entity.cc.o
> CMakeFiles/ost_mol_tests.dir/test_ics.cc.o
> CMakeFiles/ost_mol_tests.dir/test_query.cc.o
> CMakeFiles/ost_mol_tests.dir/test_surface.cc.o
> CMakeFiles/ost_mol_tests.dir/test_residue.cc.o
> CMakeFiles/ost_mol_tests.dir/test_view.cc.o
> CMakeFiles/ost_mol_tests.dir/test_transfer_connectivity.cc.o
> CMakeFiles/ost_mol_tests.dir/test_view_op.cc.o
> CMakeFiles/ost_mol_tests.dir/tests.cc.o -o ../../../../tests/ost_mol_tests
> -L/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/lib
> -Wl,-rpath,/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/lib
> /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0
> ../../../../stage/lib/libost_mol.so.2.5.0
> ../../../../stage/lib/libost_info.so.2.5.0
> ../../../../stage/lib/libost_base.so.2.5.0
> ../../../../stage/lib/libost_geom.so.2.5.0
> /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0
> /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0
> /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0
> /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0
> /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.13
> /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.13
> /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.13
> /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13
> make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
> [ 96%] Built target ost_mol_tests
> [ 96%] Linking CXX executable ../../../../tests/ost_mol_mm_tests
> cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/modules/mol/mm/tests &&
> /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_mol_mm_tests.dir/link.txt
> --verbose=1
> /usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=.
> -fstack-protector-strong -fstack-clash-protection -Wformat
> -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall
> -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro
> CMakeFiles/ost_mol_mm_tests.dir/test_interaction.cc.o
> CMakeFiles/ost_mol_mm_tests.dir/test_block.cc.o
> CMakeFiles/ost_mol_mm_tests.dir/test_block_modifiers.cc.o
> CMakeFiles/ost_mol_mm_tests.dir/test_topology.cc.o
> CMakeFiles/ost_mol_mm_tests.dir/test_forcefield.cc.o
> CMakeFiles/ost_mol_mm_tests.dir/test_simulation.cc.o
> CMakeFiles/ost_mol_mm_tests.dir/tests.cc.o -o
> ../../../../tests/ost_mol_mm_tests
> -L/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/lib
> -Wl,-rpath,/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/lib
> /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0
> ../../../../stage/lib/libost_mol_mm.so.2.5.0
> ../../../../stage/lib/libost_io.so.2.5.0
> ../../../../stage/lib/libost_mol_alg.so.2.5.0
> /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0
> ../../../../stage/lib/libost_conop.so.2.5.0
> ../../../../stage/lib/libost_db.so.2.5.0
> /usr/lib/x86_64-linux-gnu/libsqlite3.so
> /usr/lib/x86_64-linux-gnu/libboost_thread.so.1.83.0
> ../../../../stage/lib/libost_seq_alg.so.2.5.0
> ../../../../stage/lib/libost_seq.so.2.5.0
> ../../../../stage/lib/libost_mol.so.2.5.0
> ../../../../stage/lib/libost_img_alg.so.2.5.0
> ../../../../stage/lib/libost_img.so.2.5.0
> ../../../../stage/lib/libost_info.so.2.5.0
> ../../../../stage/lib/libost_base.so.2.5.0
> ../../../../stage/lib/libost_geom.so.2.5.0
> /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0
> /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0
> /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0
> /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0
> /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.13
> /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.13
> /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.13
> /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13
> /usr/lib/x86_64-linux-gnu/libfftw3f.so
> /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so
> /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0
> /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so
> /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libOpenMM.so
> make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
> [ 96%] Built target ost_mol_mm_tests
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
> make[2]: *** [CMakeFiles/Makefile2:1677: CMakeFiles/check.dir/rule] Error 2
> make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
> make[1]: *** [Makefile:192: check] Error 2
> make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
> dh_auto_test: error: cd obj-x86_64-linux-gnu && make -j8 check
> ARGS\+=--verbose ARGS\+=-j8 returned exit code 2
The full build log is available from:
http://qa-logs.debian.net/2024/06/15/openstructure_2.5.0-2_unstable.log
All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20240615;users=lu...@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20240615&fusertaguser=lu...@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
