Your message dated Wed, 22 Aug 2018 20:57:50 +0000
with message-id <e1fsacm-0001ji...@fasolo.debian.org>
and subject line Bug#906478: fixed in libbpp-phyl 2.4.1-1
has caused the Debian Bug report #906478,
regarding libbpp-phyl: FTBFS in buster/sid (dh_makeshlibs fails)
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
906478: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=906478
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:libbpp-phyl
Version: 2.4.0-2
Severity: serious
Tags: ftbfs
Dear maintainer:
I tried to build this package in buster but it failed:
--------------------------------------------------------------------------------
[...]
debian/rules build-arch
dh build-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr
-DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None
-DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var
-DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON
-DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run
"-GUnix Makefiles" ..
-- The CXX compiler identification is GNU 8.2.0
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- bpp-core 4.0.0 found:
[... snipped ...]
_ZNSt8_Rb_treeImSt4pairIKmSt6vectorIiSaIiEEESt10_Select1stIS5_ESt4lessImESaIS5_EE7_M_copyINSB_11_Alloc_nodeEEEPSt13_Rb_tree_nodeIS5_EPKSF_PSt18_Rb_tree_node_baseRT_@Base
2.4.0
@@ -4817,6 +4883,7 @@
_ZNSt8_Rb_treeImSt4pairIKmiESt10_Select1stIS2_ESt4lessImESaIS2_EE24_M_get_insert_unique_posERS1_@Base
2.4.0
_ZNSt8_Rb_treeImSt4pairIKmiESt10_Select1stIS2_ESt4lessImESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_@Base
2.4.0
_ZNSt8_Rb_treeImSt4pairIKmiESt10_Select1stIS2_ESt4lessImESaIS2_EE8_M_eraseEPSt13_Rb_tree_nodeIS2_E@Base
2.4.0
+
_ZNSt8_Rb_treeImSt4pairIKmmESt10_Select1stIS2_ESt4lessImESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_@Base
2.4.0-2
_ZNSt8_Rb_treeImSt4pairIKmmESt10_Select1stIS2_ESt4lessImESaIS2_EE24_M_get_insert_unique_posERS1_@Base
2.4.0
_ZNSt8_Rb_treeImSt4pairIKmmESt10_Select1stIS2_ESt4lessImESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_@Base
2.4.0
_ZNSt8_Rb_treeImSt4pairIKmmESt10_Select1stIS2_ESt4lessImESaIS2_EE7_M_copyINS8_11_Alloc_nodeEEEPSt13_Rb_tree_nodeIS2_EPKSC_PSt18_Rb_tree_node_baseRT_@Base
2.4.0
@@ -4848,15 +4915,21 @@
_ZSt16__insertion_sortIN9__gnu_cxx17__normal_iteratorIPNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt6vectorIS7_SaIS7_EEEENS0_5__ops15_Iter_less_iterEEvT_SF_T0_@Base
2.4.0
_ZSt16__insertion_sortIN9__gnu_cxx17__normal_iteratorIPdSt6vectorIdSaIdEEEENS0_5__ops15_Iter_less_iterEEvT_S9_T0_@Base
2.4.0
_ZSt16__insertion_sortIN9__gnu_cxx17__normal_iteratorIPiSt6vectorIiSaIiEEEENS0_5__ops15_Iter_less_iterEEvT_S9_T0_@Base
2.4.0
+
_ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIPdSt6vectorIdSaIdEEEElNS0_5__ops15_Iter_less_iterEEvT_S9_T0_T1_@Base
2.4.0-2
+
_ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIPiSt6vectorIiSaIiEEEElNS0_5__ops15_Iter_less_iterEEvT_S9_T0_T1_@Base
2.4.0-2
+
_ZSt22__final_insertion_sortIN9__gnu_cxx17__normal_iteratorIPiSt6vectorIiSaIiEEEENS0_5__ops15_Iter_less_iterEEvT_S9_T0_@Base
2.4.0-2
_ZSt25__unguarded_linear_insertIN9__gnu_cxx17__normal_iteratorIP12StringAndIntSt6vectorIS2_SaIS2_EEEENS0_5__ops14_Val_less_iterEEvT_T0_@Base
2.4.0
_ZSt25__unguarded_linear_insertIN9__gnu_cxx17__normal_iteratorIPN3bpp12SitePatterns12SortableSiteESt6vectorIS4_SaIS4_EEEENS0_5__ops14_Val_less_iterEEvT_T0_@Base
2.4.0
- _ZSt4fillSt13_Bit_iteratorS_RKb@Base 2.4.0
-
_ZSt4findIN9__gnu_cxx17__normal_iteratorIPPN3bpp4NodeESt6vectorIS4_SaIS4_EEEES4_ET_SA_SA_RKT0_@Base
2.4.0
+
_ZSt25__unguarded_linear_insertIN9__gnu_cxx17__normal_iteratorIPNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt6vectorIS7_SaIS7_EEEENS0_5__ops14_Val_less_iterEEvT_T0_@Base
2.4.0-2
+#MISSING: 2.4.0-2# _ZSt4fillSt13_Bit_iteratorS_RKb@Base 2.4.0
+#MISSING: 2.4.0-2#
_ZSt4findIN9__gnu_cxx17__normal_iteratorIPPN3bpp4NodeESt6vectorIS4_SaIS4_EEEES4_ET_SA_SA_RKT0_@Base
2.4.0
_ZSt4swapI12StringAndIntENSt9enable_ifIXsrSt6__and_IJSt6__not_ISt15__is_tuple_likeIT_EESt21is_move_constructibleIS5_ESt18is_move_assignableIS5_EEE5valueEvE4typeERS5_SF_@Base
2.4.0
_ZSt5fixedRSt8ios_base@Base 2.4.0
_ZSt9__find_ifIN9__gnu_cxx17__normal_iteratorIPNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt6vectorIS7_SaIS7_EEEENS0_5__ops16_Iter_equals_valIKS7_EEET_SH_SH_T0_St26random_access_iterator_tag@Base
2.4.0
_ZSt9__find_ifIN9__gnu_cxx17__normal_iteratorIPPN3bpp19TreeDrawingListenerESt6vectorIS4_SaIS4_EEEENS0_5__ops16_Iter_equals_valIKS4_EEET_SE_SE_T0_St26random_access_iterator_tag@Base
2.4.0
-
_ZSteqINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEbRKSt6vectorIT_T0_ESC_@Base
2.4.0
+
_ZSt9__find_ifIN9__gnu_cxx17__normal_iteratorIPPN3bpp4NodeESt6vectorIS4_SaIS4_EEEENS0_5__ops16_Iter_equals_valIKS4_EEET_SE_SE_T0_St26random_access_iterator_tag@Base
2.4.0-2
+
_ZSt9__find_ifIN9__gnu_cxx17__normal_iteratorIPiSt6vectorIiSaIiEEEENS0_5__ops16_Iter_equals_valIKiEEET_SB_SB_T0_St26random_access_iterator_tag@Base
2.4.0-2
+#MISSING: 2.4.0-2#
_ZSteqINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEbRKSt6vectorIT_T0_ESC_@Base
2.4.0
_ZSteqIcEN9__gnu_cxx11__enable_ifIXsrSt9__is_charIT_E7__valueEbE6__typeERKNSt7__cxx1112basic_stringIS3_St11char_traitsIS3_ESaIS3_EEESE_@Base
2.4.0
_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEOS8_PKS5_@Base
2.4.0
_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEOS8_RKS8_@Base
2.4.0
@@ -8080,6 +8153,7 @@
_ZTv0_n24_N3bpp16BranchLikelihoodD1Ev@Base 2.4.0
_ZTv0_n24_N3bpp16GCFrequenciesSetD0Ev@Base 2.4.0
_ZTv0_n24_N3bpp16GCFrequenciesSetD1Ev@Base 2.4.0
+ _ZTv0_n24_N3bpp17BrentOneDimensionD0Ev@Base 2.4.0-2
_ZTv0_n24_N3bpp17CanonicalStateMapD0Ev@Base 2.4.0
_ZTv0_n24_N3bpp17CanonicalStateMapD1Ev@Base 2.4.0
_ZTv0_n24_N3bpp17MvaFrequenciesSetD0Ev@Base 2.4.0
dh_makeshlibs: failing due to earlier errors
make[1]: *** [debian/rules:15: override_dh_makeshlibs] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:10: binary-arch] Error 2
dpkg-buildpackage: error: fakeroot debian/rules binary-arch subprocess returned
exit status 2
--------------------------------------------------------------------------------
The build was made with "dpkg-buildpackage -B" in my autobuilder.
Most probably, it also fails here in reproducible builds:
https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/libbpp-phyl.html
where you can get a full build log if you need it.
If this is really a bug in one of the build-depends, please use reassign and
affects,
so that this is still visible in the BTS web page for this package.
Thanks.
--- End Message ---
--- Begin Message ---
Source: libbpp-phyl
Source-Version: 2.4.1-1
We believe that the bug you reported is fixed in the latest version of
libbpp-phyl, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 906...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Julien Dutheil <julien.duth...@univ-montp2.fr> (supplier of updated libbpp-phyl
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sun, 19 Aug 2018 21:36:23 +0200
Source: libbpp-phyl
Binary: libbpp-phyl-dev libbpp-phyl12
Architecture: source
Version: 2.4.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Julien Dutheil <julien.duth...@univ-montp2.fr>
Description:
libbpp-phyl-dev - Bio++ Phylogenetic library development files
libbpp-phyl12 - Bio++ Phylogenetic library
Closes: 906478
Changes:
libbpp-phyl (2.4.1-1) unstable; urgency=medium
.
[ Julien Dutheil ]
* New upstream update.
Closes: #906478
.
[ Andreas Tille ]
* Standards-Version: 4.2.0
Checksums-Sha1:
05eaed663d5fdbc9f4564796c6cd8ee4f4def2ea 2149 libbpp-phyl_2.4.1-1.dsc
fe6808b427b667d4d2609e887dad9f571771a1d2 600392 libbpp-phyl_2.4.1.orig.tar.gz
c1a668f9cb5dd4a07775f1c862151bbca6ee6777 56308
libbpp-phyl_2.4.1-1.debian.tar.xz
Checksums-Sha256:
b22908a71db5d31f6c1644b8d75c810688530583658a69707cafe9fd1715f6a0 2149
libbpp-phyl_2.4.1-1.dsc
e7bf7d4570f756b7773904ffa600ffcd77c965553ddb5cbc252092d1da962ff2 600392
libbpp-phyl_2.4.1.orig.tar.gz
1a2003ada72a9b8701dc9bff3f749ccf3f6ab64f1f1873591eeaa3e52ab2a1ce 56308
libbpp-phyl_2.4.1-1.debian.tar.xz
Files:
8b99f13c7a1c7638e1944911a90f4e3e 2149 science optional libbpp-phyl_2.4.1-1.dsc
05c58ac05a1f7525888df2b04c4a800c 600392 science optional
libbpp-phyl_2.4.1.orig.tar.gz
01ee6fe589b5e88c86a2e8d5cfae81dc 56308 science optional
libbpp-phyl_2.4.1-1.debian.tar.xz
-----BEGIN PGP SIGNATURE-----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=F3e2
-----END PGP SIGNATURE-----
--- End Message ---
