Package: src:libbpp-phyl
Version: 2.4.0-2
Severity: serious
Tags: ftbfs
Dear maintainer:
I tried to build this package in buster but it failed:
--------------------------------------------------------------------------------
[...]
debian/rules build-arch
dh build-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr
-DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None
-DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var
-DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON
-DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run
"-GUnix Makefiles" ..
-- The CXX compiler identification is GNU 8.2.0
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- bpp-core 4.0.0 found:
[... snipped ...]
_ZNSt8_Rb_treeImSt4pairIKmSt6vectorIiSaIiEEESt10_Select1stIS5_ESt4lessImESaIS5_EE7_M_copyINSB_11_Alloc_nodeEEEPSt13_Rb_tree_nodeIS5_EPKSF_PSt18_Rb_tree_node_baseRT_@Base
2.4.0
@@ -4817,6 +4883,7 @@
_ZNSt8_Rb_treeImSt4pairIKmiESt10_Select1stIS2_ESt4lessImESaIS2_EE24_M_get_insert_unique_posERS1_@Base
2.4.0
_ZNSt8_Rb_treeImSt4pairIKmiESt10_Select1stIS2_ESt4lessImESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_@Base
2.4.0
_ZNSt8_Rb_treeImSt4pairIKmiESt10_Select1stIS2_ESt4lessImESaIS2_EE8_M_eraseEPSt13_Rb_tree_nodeIS2_E@Base
2.4.0
+
_ZNSt8_Rb_treeImSt4pairIKmmESt10_Select1stIS2_ESt4lessImESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_@Base
2.4.0-2
_ZNSt8_Rb_treeImSt4pairIKmmESt10_Select1stIS2_ESt4lessImESaIS2_EE24_M_get_insert_unique_posERS1_@Base
2.4.0
_ZNSt8_Rb_treeImSt4pairIKmmESt10_Select1stIS2_ESt4lessImESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_@Base
2.4.0
_ZNSt8_Rb_treeImSt4pairIKmmESt10_Select1stIS2_ESt4lessImESaIS2_EE7_M_copyINS8_11_Alloc_nodeEEEPSt13_Rb_tree_nodeIS2_EPKSC_PSt18_Rb_tree_node_baseRT_@Base
2.4.0
@@ -4848,15 +4915,21 @@
_ZSt16__insertion_sortIN9__gnu_cxx17__normal_iteratorIPNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt6vectorIS7_SaIS7_EEEENS0_5__ops15_Iter_less_iterEEvT_SF_T0_@Base
2.4.0
_ZSt16__insertion_sortIN9__gnu_cxx17__normal_iteratorIPdSt6vectorIdSaIdEEEENS0_5__ops15_Iter_less_iterEEvT_S9_T0_@Base
2.4.0
_ZSt16__insertion_sortIN9__gnu_cxx17__normal_iteratorIPiSt6vectorIiSaIiEEEENS0_5__ops15_Iter_less_iterEEvT_S9_T0_@Base
2.4.0
+
_ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIPdSt6vectorIdSaIdEEEElNS0_5__ops15_Iter_less_iterEEvT_S9_T0_T1_@Base
2.4.0-2
+
_ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIPiSt6vectorIiSaIiEEEElNS0_5__ops15_Iter_less_iterEEvT_S9_T0_T1_@Base
2.4.0-2
+
_ZSt22__final_insertion_sortIN9__gnu_cxx17__normal_iteratorIPiSt6vectorIiSaIiEEEENS0_5__ops15_Iter_less_iterEEvT_S9_T0_@Base
2.4.0-2
_ZSt25__unguarded_linear_insertIN9__gnu_cxx17__normal_iteratorIP12StringAndIntSt6vectorIS2_SaIS2_EEEENS0_5__ops14_Val_less_iterEEvT_T0_@Base
2.4.0
_ZSt25__unguarded_linear_insertIN9__gnu_cxx17__normal_iteratorIPN3bpp12SitePatterns12SortableSiteESt6vectorIS4_SaIS4_EEEENS0_5__ops14_Val_less_iterEEvT_T0_@Base
2.4.0
- _ZSt4fillSt13_Bit_iteratorS_RKb@Base 2.4.0
-
_ZSt4findIN9__gnu_cxx17__normal_iteratorIPPN3bpp4NodeESt6vectorIS4_SaIS4_EEEES4_ET_SA_SA_RKT0_@Base
2.4.0
+
_ZSt25__unguarded_linear_insertIN9__gnu_cxx17__normal_iteratorIPNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt6vectorIS7_SaIS7_EEEENS0_5__ops14_Val_less_iterEEvT_T0_@Base
2.4.0-2
+#MISSING: 2.4.0-2# _ZSt4fillSt13_Bit_iteratorS_RKb@Base 2.4.0
+#MISSING: 2.4.0-2#
_ZSt4findIN9__gnu_cxx17__normal_iteratorIPPN3bpp4NodeESt6vectorIS4_SaIS4_EEEES4_ET_SA_SA_RKT0_@Base
2.4.0
_ZSt4swapI12StringAndIntENSt9enable_ifIXsrSt6__and_IJSt6__not_ISt15__is_tuple_likeIT_EESt21is_move_constructibleIS5_ESt18is_move_assignableIS5_EEE5valueEvE4typeERS5_SF_@Base
2.4.0
_ZSt5fixedRSt8ios_base@Base 2.4.0
_ZSt9__find_ifIN9__gnu_cxx17__normal_iteratorIPNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt6vectorIS7_SaIS7_EEEENS0_5__ops16_Iter_equals_valIKS7_EEET_SH_SH_T0_St26random_access_iterator_tag@Base
2.4.0
_ZSt9__find_ifIN9__gnu_cxx17__normal_iteratorIPPN3bpp19TreeDrawingListenerESt6vectorIS4_SaIS4_EEEENS0_5__ops16_Iter_equals_valIKS4_EEET_SE_SE_T0_St26random_access_iterator_tag@Base
2.4.0
-
_ZSteqINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEbRKSt6vectorIT_T0_ESC_@Base
2.4.0
+
_ZSt9__find_ifIN9__gnu_cxx17__normal_iteratorIPPN3bpp4NodeESt6vectorIS4_SaIS4_EEEENS0_5__ops16_Iter_equals_valIKS4_EEET_SE_SE_T0_St26random_access_iterator_tag@Base
2.4.0-2
+
_ZSt9__find_ifIN9__gnu_cxx17__normal_iteratorIPiSt6vectorIiSaIiEEEENS0_5__ops16_Iter_equals_valIKiEEET_SB_SB_T0_St26random_access_iterator_tag@Base
2.4.0-2
+#MISSING: 2.4.0-2#
_ZSteqINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEbRKSt6vectorIT_T0_ESC_@Base
2.4.0
_ZSteqIcEN9__gnu_cxx11__enable_ifIXsrSt9__is_charIT_E7__valueEbE6__typeERKNSt7__cxx1112basic_stringIS3_St11char_traitsIS3_ESaIS3_EEESE_@Base
2.4.0
_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEOS8_PKS5_@Base
2.4.0
_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEOS8_RKS8_@Base
2.4.0
@@ -8080,6 +8153,7 @@
_ZTv0_n24_N3bpp16BranchLikelihoodD1Ev@Base 2.4.0
_ZTv0_n24_N3bpp16GCFrequenciesSetD0Ev@Base 2.4.0
_ZTv0_n24_N3bpp16GCFrequenciesSetD1Ev@Base 2.4.0
+ _ZTv0_n24_N3bpp17BrentOneDimensionD0Ev@Base 2.4.0-2
_ZTv0_n24_N3bpp17CanonicalStateMapD0Ev@Base 2.4.0
_ZTv0_n24_N3bpp17CanonicalStateMapD1Ev@Base 2.4.0
_ZTv0_n24_N3bpp17MvaFrequenciesSetD0Ev@Base 2.4.0
dh_makeshlibs: failing due to earlier errors
make[1]: *** [debian/rules:15: override_dh_makeshlibs] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:10: binary-arch] Error 2
dpkg-buildpackage: error: fakeroot debian/rules binary-arch subprocess returned
exit status 2
--------------------------------------------------------------------------------
The build was made with "dpkg-buildpackage -B" in my autobuilder.
Most probably, it also fails here in reproducible builds:
https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/libbpp-phyl.html
where you can get a full build log if you need it.
If this is really a bug in one of the build-depends, please use reassign and
affects,
so that this is still visible in the BTS web page for this package.
Thanks.
