Your message dated Wed, 06 Apr 2016 07:35:11 +0000 with message-id <e1anhzb-0001y2...@franck.debian.org> and subject line Bug#818397: fixed in salmon 0.4.2+ds1-3 has caused the Debian Bug report #818397, regarding salmon: FTBFS: 'MEM_F_SELF_OVLP' was not declared in this scope to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 818397: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=818397 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: salmon Version: 0.4.2+ds1-2 Severity: serious This package fails to build in unstable: > sbuild (Debian sbuild) 0.68.0 (15 Jan 2016) on dl580gen9-02.hlinux ... > /<<BUILDDIR>>/salmon-0.4.2+ds1/src/CollapsedGibbsSampler.cpp: In function > 'void sampleRound_(std::vector<std::pair<const TranscriptGroup, TGValue> >&, > std::vector<int>&, std::vector<double>&, double, std::vector<int>&, > MultinomialSampler&)': > /<<BUILDDIR>>/salmon-0.4.2+ds1/src/CollapsedGibbsSampler.cpp:119:18: warning: > unused variable 'classCount' [-Wunused-variable] > uint64_t classCount = eqClass.second.count; > ^ > /<<BUILDDIR>>/salmon-0.4.2+ds1/src/SalmonQuantify.cpp: In function 'void > mem_collect_intv(const SalmonOpts&, const mem_opt_t*, const bwt_t*, int, > const uint8_t*, smem_aux_t*)': > /<<BUILDDIR>>/salmon-0.4.2+ds1/src/SalmonQuantify.cpp:159:36: error: > 'MEM_F_SELF_OVLP' was not declared in this scope > int start_width = (opt->flag & MEM_F_SELF_OVLP)? 2 : 1; -- Martin Michlmayr Linux for HPE Helion, Hewlett Packard Enterprise
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--- Begin Message ---Source: salmon Source-Version: 0.4.2+ds1-3 We believe that the bug you reported is fixed in the latest version of salmon, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 818...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Sascha Steinbiss <sas...@steinbiss.name> (supplier of updated salmon package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Tue, 05 Apr 2016 21:20:56 +0000 Source: salmon Binary: salmon Architecture: source amd64 Version: 0.4.2+ds1-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Sascha Steinbiss <sas...@steinbiss.name> Description: salmon - wicked-fast transcript quantification from RNA-seq data Closes: 818397 Changes: salmon (0.4.2+ds1-3) unstable; urgency=medium . [ Sascha Steinbiss ] * Team upload. * Re-introduce bitmask for MEM_F_SELF_OVLP dropped by libbwa upstream. Closes: #818397 . [ Andreas Tille ] * Drop note that we can not set better hardening Checksums-Sha1: 2b7680f24f63c6853cc28d4859723b07e5766298 2300 salmon_0.4.2+ds1-3.dsc 5b6de9b64ec3bf7987dcd7630dadb8a3cdc5217b 14100 salmon_0.4.2+ds1-3.debian.tar.xz 370cd1db3118cb457939dc4c4d1938d73774dfa7 166876 salmon-dbgsym_0.4.2+ds1-3_amd64.deb b821e4dd1289f2248031f0e92e4e9c22cc050270 1268796 salmon_0.4.2+ds1-3_amd64.deb Checksums-Sha256: ab43c418d4830faca58dee5dada2a512c384b6a1fb14b97824816493df67c37e 2300 salmon_0.4.2+ds1-3.dsc 78feea7f866b485cfa4d199cebc616da46679e7fd53ad766f19bf15538ed5247 14100 salmon_0.4.2+ds1-3.debian.tar.xz 457e933122c331ae71d3979cb9404f37fcd5a789737d159bb0ac184155236bcf 166876 salmon-dbgsym_0.4.2+ds1-3_amd64.deb 6f4fdac636f0d2b48dc96d60fb7489e6b938860954c8508c0621a26382f67ad8 1268796 salmon_0.4.2+ds1-3_amd64.deb Files: df3a1ace80981830e45cb34c0d56cb10 2300 science optional salmon_0.4.2+ds1-3.dsc 7e6426b78dc83914f48bf8988298027b 14100 science optional salmon_0.4.2+ds1-3.debian.tar.xz 5017d621cfc2ecc6f8b25d15dc749602 166876 debug extra salmon-dbgsym_0.4.2+ds1-3_amd64.deb 2e899468c0b12524d3ca2b90b8f53106 1268796 science optional salmon_0.4.2+ds1-3_amd64.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCAAGBQJXBLmZAAoJEFeKBJTRxkbR1bQP/1WixA6X+B+6kGuVU0WPRkSg 8KvjzOq8ExQoNswSUoGApWSOxTvWsA0DJdq9QxZIkzZxZy5WSOeNCHPYu8aYSS8b gqvWQ/leMxYbz3hxUF0q42ut9q0mE8EKSNEqbjtGip7UZ7vQuG4UizU+iBYgQN1p 82PHCqAnS/2sb43E+ukXlNN549YitgzG8bSYh+1s0w5TtudLxj9kVMO4KIsWErcY nM/YBEQTeDetWYiKNZeKmEB7GjkXNVF8GKCmOkmR6+HwIvy+AlJYOOpsexinXVdf /5Ojo/Y7ZIN1bzgZVWXr3j/pyCSvcWuaMBZeiyRmRy63347WX1T9qVlG3q47I3cR O+MbWcWtyIsNM+O2PUE4hX8KlIq2ConmvbnLsYu3HDAwu6UP4cQwnujQ+ZeLUo+B EECVJ9aNwcA68eDVlJ2Xvcv+DpC6a+fChEvLl2iFo183CAZdUS2mzHJilezvL2Nz PEm0VRVu9cXB4kZ4el/v7wHAmwq2R2J9bqtt2uGCsoei4aAY8DFQ6/uCrqlO+3Hb H+5Lntvv1O0ALtRz6IFvxQxlh9Ya1Z1LwHZDZPuBEjP1cWY8dILjFU83aGjx4LTQ kQ80+FrM70l/zPigI+aTcw9QJAfC/dY7X/PNh7mL+jGQvfVU2Y17TRlyE/wfk4U+ 1evQtxnWFv37IYs0Lzba =3kkv -----END PGP SIGNATURE-----
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