Hi, I have pushed a fix for this to git. I would be glad if someone could take a look.
Thanks Sascha On Wed, 16 Mar 2016 13:36:46 -0700 Martin Michlmayr <t...@hpe.com> wrote: > Package: salmon > Version: 0.4.2+ds1-2 > Severity: serious > > This package fails to build in unstable: > > > sbuild (Debian sbuild) 0.68.0 (15 Jan 2016) on dl580gen9-02.hlinux > ... > > /<<BUILDDIR>>/salmon-0.4.2+ds1/src/CollapsedGibbsSampler.cpp: In function > > 'void sampleRound_(std::vector<std::pair<const TranscriptGroup, TGValue> > > >&, std::vector<int>&, std::vector<double>&, double, std::vector<int>&, > > MultinomialSampler&)': > > /<<BUILDDIR>>/salmon-0.4.2+ds1/src/CollapsedGibbsSampler.cpp:119:18: > > warning: unused variable 'classCount' [-Wunused-variable] > > uint64_t classCount = eqClass.second.count; > > ^ > > /<<BUILDDIR>>/salmon-0.4.2+ds1/src/SalmonQuantify.cpp: In function 'void > > mem_collect_intv(const SalmonOpts&, const mem_opt_t*, const bwt_t*, int, > > const uint8_t*, smem_aux_t*)': > > /<<BUILDDIR>>/salmon-0.4.2+ds1/src/SalmonQuantify.cpp:159:36: error: > > 'MEM_F_SELF_OVLP' was not declared in this scope > > int start_width = (opt->flag & MEM_F_SELF_OVLP)? 2 : 1; > > -- > Martin Michlmayr > Linux for HPE Helion, Hewlett Packard Enterprise > >
