Le ven. 12 févr. 2016 16:31, Andreas Tille <andr...@an3as.eu> a écrit :
> Hi, > > I upgraded Git that was featuring version 2.0.1+dfsg.1 meanwhile to > Build-Depend and use libngs-java. I think we should continue from this > point to fix the reported bug. Unfortunately I was running in more > errors of the test suite which looked more relevant than the reported > one. Could anyone with Java experience please have a look? > > Hi > I will have a look next week Olivier > Kind regards > > Andreas. > > On Thu, Feb 11, 2016 at 09:01:59PM +0100, Andreas Tille wrote: > > Hi, > > > > any hint why this test that worked before might fail since end of > > December? > > > > Kind regards > > > > Andreas. > > > > On Mon, Dec 21, 2015 at 10:59:11AM +0000, Chris Lamb wrote: > > > Source: htsjdk > > > Version: 1.138+dfsg.1-4 > > > Severity: serious > > > Justification: fails to build from source > > > User: reproducible-bui...@lists.alioth.debian.org > > > Usertags: ftbfs > > > X-Debbugs-Cc: reproducible-bui...@lists.alioth.debian.org > > > > > > Dear Maintainer, > > > > > > htsjdk fails to build from source in unstable/amd64: > > > > > > [..] > > > > > > [testng] PASSED: testReadAndSkipWithMultipleBlocks([null of CHAR, > null of CHAR, null of FLOAT]) > > > [testng] PASSED: testReadAndSkipWithMultipleBlocks([null of CHAR, > null of CHAR, null of CHAR]) > > > [testng] FAILED: testHTTPNotExist > > > [testng] java.lang.AssertionError: expected [false] but found > [true] > > > [testng] at org.testng.Assert.fail(Assert.java:94) > > > [testng] at org.testng.Assert.failNotEquals(Assert.java:496) > > > [testng] at org.testng.Assert.assertEquals(Assert.java:125) > > > [testng] at org.testng.Assert.assertEquals(Assert.java:288) > > > [testng] at org.testng.Assert.assertEquals(Assert.java:298) > > > [testng] at > htsjdk.tribble.util.ParsingUtilsTest.tstExists(ParsingUtilsTest.java:142) > > > [testng] at > htsjdk.tribble.util.ParsingUtilsTest.testHTTPNotExist(ParsingUtilsTest.java:137) > > > [testng] at > sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) > > > [testng] at > sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) > > > [testng] at > sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) > > > [testng] at java.lang.reflect.Method.invoke(Method.java:606) > > > [testng] at > org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85) > > > [testng] at > org.testng.internal.Invoker.invokeMethod(Invoker.java:639) > > > [testng] at > org.testng.internal.Invoker.invokeTestMethod(Invoker.java:821) > > > [testng] at > org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1131) > > > [testng] at > org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124) > > > [testng] at > org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108) > > > [testng] at > org.testng.TestRunner.privateRun(TestRunner.java:773) > > > [testng] at org.testng.TestRunner.run(TestRunner.java:623) > > > [testng] at > org.testng.SuiteRunner.runTest(SuiteRunner.java:357) > > > [testng] at > org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352) > > > [testng] at > org.testng.SuiteRunner.privateRun(SuiteRunner.java:310) > > > [testng] at org.testng.SuiteRunner.run(SuiteRunner.java:259) > > > [testng] at > org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) > > > [testng] at > org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86) > > > [testng] at > org.testng.TestNG.runSuitesSequentially(TestNG.java:1185) > > > [testng] at > org.testng.TestNG.runSuitesLocally(TestNG.java:1110) > > > [testng] at org.testng.TestNG.run(TestNG.java:1018) > > > [testng] at org.testng.TestNG.privateMain(TestNG.java:1325) > > > [testng] at org.testng.TestNG.main(TestNG.java:1294) > > > [testng] > > > [testng] SKIPPED: basic > > > [testng] org.testng.TestNGException: > > > [testng] Method public void > htsjdk.samtools.util.IupacTest.basic(java.lang.String) throws > java.lang.Exception requires a @DataProvider named : basicDataProvider > > > [testng] at > org.testng.internal.Parameters.findDataProvider(Parameters.java:262) > > > [testng] at > org.testng.internal.Parameters.handleParameters(Parameters.java:418) > > > [testng] at > org.testng.internal.Invoker.handleParameters(Invoker.java:1276) > > > [testng] at > org.testng.internal.Invoker.createParameters(Invoker.java:992) > > > [testng] at > org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1082) > > > [testng] at > org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124) > > > [testng] at > org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108) > > > [testng] at > org.testng.TestRunner.privateRun(TestRunner.java:773) > > > [testng] at org.testng.TestRunner.run(TestRunner.java:623) > > > [testng] at > org.testng.SuiteRunner.runTest(SuiteRunner.java:357) > > > [testng] at > org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352) > > > [testng] at > org.testng.SuiteRunner.privateRun(SuiteRunner.java:310) > > > [testng] at org.testng.SuiteRunner.run(SuiteRunner.java:259) > > > [testng] at > org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) > > > [testng] at > org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86) > > > [testng] at > org.testng.TestNG.runSuitesSequentially(TestNG.java:1185) > > > [testng] at > org.testng.TestNG.runSuitesLocally(TestNG.java:1110) > > > [testng] at org.testng.TestNG.run(TestNG.java:1018) > > > [testng] at org.testng.TestNG.privateMain(TestNG.java:1325) > > > [testng] at org.testng.TestNG.main(TestNG.java:1294) > > > [testng] > > > [testng] > > > [testng] =============================================== > > > [testng] Ant test > > > [testng] Tests run: 22291, Failures: 1, Skips: 1 > > > [testng] =============================================== > > > [testng] > > > [testng] > > > [testng] =============================================== > > > [testng] htsjdk-tests > > > [testng] Total tests run: 22291, Failures: 1, Skips: 1 > > > [testng] =============================================== > > > [testng] > > > [testng] [TestNG] Time taken by > org.testng.reporters.JUnitReportReporter@701b9555: 373 ms > > > [testng] [TestNG] Time taken by > org.testng.reporters.SuiteHTMLReporter@361b90be: 1395 ms > > > [testng] [TestNG] Time taken by > org.testng.reporters.jq.Main@38d591cc: 2560 ms > > > [testng] [TestNG] Time taken by > org.testng.reporters.XMLReporter@26538d04: 944 ms > > > [testng] [TestNG] Time taken by [FailedReporter passed=0 failed=0 > skipped=0]: 18 ms > > > [testng] [TestNG] Time taken by > org.testng.reporters.EmailableReporter2@1b66a538: 266 ms > > > [testng] The tests failed. > > > [junitreport] the file > /home/lamby/temp/cdt.20151221104713.yWL3WPWVr4/htsjdk-1.138+dfsg.1/dist/test/testng-failed.xml > is not a valid testsuite XML document > > > [junitreport] the file > /home/lamby/temp/cdt.20151221104713.yWL3WPWVr4/htsjdk-1.138+dfsg.1/dist/test/testng-results.xml > is not a valid testsuite XML document > > > [junitreport] Processing > /home/lamby/temp/cdt.20151221104713.yWL3WPWVr4/htsjdk-1.138+dfsg.1/dist/test/TESTS-TestSuites.xml > to > /home/lamby/temp/cdt.20151221104713.yWL3WPWVr4/htsjdk-1.138+dfsg.1/dist/test/junit-noframes.html > > > [junitreport] Loading stylesheet > /home/lamby/temp/cdt.20151221104713.yWL3WPWVr4/htsjdk-1.138+dfsg.1/etc/test/junit-noframes.xsl > > > [junitreport] Transform time: 243ms > > > [copy] Copying 1 file to > /home/lamby/temp/cdt.20151221104713.yWL3WPWVr4/htsjdk-1.138+dfsg.1/dist/test > > > > > > BUILD FAILED > > > > > /home/lamby/temp/cdt.20151221104713.yWL3WPWVr4/htsjdk-1.138+dfsg.1/build.xml:151: > There were failed unit tests > > > > > > Total time: 6 minutes 39 seconds > > > dh_auto_build: ant -Dant.build.javac.source=1.5 > -Dant.build.javac.target=1.5 -Ddebug=true test returned exit code 1 > > > debian/rules:24: recipe for target 'override_dh_auto_test' failed > > > make[1]: *** [override_dh_auto_test] Error 2 > > > make[1]: Leaving directory > '/home/lamby/temp/cdt.20151221104713.yWL3WPWVr4/htsjdk-1.138+dfsg.1' > > > debian/rules:10: recipe for target 'build' failed > > > make: *** [build] Error 2 > > > > > > [..] > > > > > > The full build log is attached. > > > > > > > > > Regards, > > > > > > -- > > > ,''`. > > > : :' : Chris Lamb > > > `. `'` la...@debian.org / chris-lamb.co.uk > > > `- > > > > > > > _______________________________________________ > > > Debian-med-packaging mailing list > > > debian-med-packag...@lists.alioth.debian.org > > > > http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging > > > > > > -- > > http://fam-tille.de > > > > _______________________________________________ > > Debian-med-packaging mailing list > > debian-med-packag...@lists.alioth.debian.org > > > http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging > > > > -- > http://fam-tille.de >
