Hi,
I upgraded Git that was featuring version 2.0.1+dfsg.1 meanwhile to
Build-Depend and use libngs-java. I think we should continue from this
point to fix the reported bug. Unfortunately I was running in more
errors of the test suite which looked more relevant than the reported
one. Could anyone with Java experience please have a look?
Kind regards
Andreas.
On Thu, Feb 11, 2016 at 09:01:59PM +0100, Andreas Tille wrote:
> Hi,
>
> any hint why this test that worked before might fail since end of
> December?
>
> Kind regards
>
> Andreas.
>
> On Mon, Dec 21, 2015 at 10:59:11AM +0000, Chris Lamb wrote:
> > Source: htsjdk
> > Version: 1.138+dfsg.1-4
> > Severity: serious
> > Justification: fails to build from source
> > User: reproducible-bui...@lists.alioth.debian.org
> > Usertags: ftbfs
> > X-Debbugs-Cc: reproducible-bui...@lists.alioth.debian.org
> >
> > Dear Maintainer,
> >
> > htsjdk fails to build from source in unstable/amd64:
> >
> > [..]
> >
> > [testng] PASSED: testReadAndSkipWithMultipleBlocks([null of CHAR, null
> > of CHAR, null of FLOAT])
> > [testng] PASSED: testReadAndSkipWithMultipleBlocks([null of CHAR, null
> > of CHAR, null of CHAR])
> > [testng] FAILED: testHTTPNotExist
> > [testng] java.lang.AssertionError: expected [false] but found [true]
> > [testng] at org.testng.Assert.fail(Assert.java:94)
> > [testng] at org.testng.Assert.failNotEquals(Assert.java:496)
> > [testng] at org.testng.Assert.assertEquals(Assert.java:125)
> > [testng] at org.testng.Assert.assertEquals(Assert.java:288)
> > [testng] at org.testng.Assert.assertEquals(Assert.java:298)
> > [testng] at
> > htsjdk.tribble.util.ParsingUtilsTest.tstExists(ParsingUtilsTest.java:142)
> > [testng] at
> > htsjdk.tribble.util.ParsingUtilsTest.testHTTPNotExist(ParsingUtilsTest.java:137)
> > [testng] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native
> > Method)
> > [testng] at
> > sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
> > [testng] at
> > sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
> > [testng] at java.lang.reflect.Method.invoke(Method.java:606)
> > [testng] at
> > org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85)
> > [testng] at
> > org.testng.internal.Invoker.invokeMethod(Invoker.java:639)
> > [testng] at
> > org.testng.internal.Invoker.invokeTestMethod(Invoker.java:821)
> > [testng] at
> > org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1131)
> > [testng] at
> > org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124)
> > [testng] at
> > org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108)
> > [testng] at org.testng.TestRunner.privateRun(TestRunner.java:773)
> > [testng] at org.testng.TestRunner.run(TestRunner.java:623)
> > [testng] at org.testng.SuiteRunner.runTest(SuiteRunner.java:357)
> > [testng] at
> > org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352)
> > [testng] at
> > org.testng.SuiteRunner.privateRun(SuiteRunner.java:310)
> > [testng] at org.testng.SuiteRunner.run(SuiteRunner.java:259)
> > [testng] at
> > org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52)
> > [testng] at
> > org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86)
> > [testng] at
> > org.testng.TestNG.runSuitesSequentially(TestNG.java:1185)
> > [testng] at org.testng.TestNG.runSuitesLocally(TestNG.java:1110)
> > [testng] at org.testng.TestNG.run(TestNG.java:1018)
> > [testng] at org.testng.TestNG.privateMain(TestNG.java:1325)
> > [testng] at org.testng.TestNG.main(TestNG.java:1294)
> > [testng]
> > [testng] SKIPPED: basic
> > [testng] org.testng.TestNGException:
> > [testng] Method public void
> > htsjdk.samtools.util.IupacTest.basic(java.lang.String) throws
> > java.lang.Exception requires a @DataProvider named : basicDataProvider
> > [testng] at
> > org.testng.internal.Parameters.findDataProvider(Parameters.java:262)
> > [testng] at
> > org.testng.internal.Parameters.handleParameters(Parameters.java:418)
> > [testng] at
> > org.testng.internal.Invoker.handleParameters(Invoker.java:1276)
> > [testng] at
> > org.testng.internal.Invoker.createParameters(Invoker.java:992)
> > [testng] at
> > org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1082)
> > [testng] at
> > org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124)
> > [testng] at
> > org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108)
> > [testng] at org.testng.TestRunner.privateRun(TestRunner.java:773)
> > [testng] at org.testng.TestRunner.run(TestRunner.java:623)
> > [testng] at org.testng.SuiteRunner.runTest(SuiteRunner.java:357)
> > [testng] at
> > org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352)
> > [testng] at
> > org.testng.SuiteRunner.privateRun(SuiteRunner.java:310)
> > [testng] at org.testng.SuiteRunner.run(SuiteRunner.java:259)
> > [testng] at
> > org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52)
> > [testng] at
> > org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86)
> > [testng] at
> > org.testng.TestNG.runSuitesSequentially(TestNG.java:1185)
> > [testng] at org.testng.TestNG.runSuitesLocally(TestNG.java:1110)
> > [testng] at org.testng.TestNG.run(TestNG.java:1018)
> > [testng] at org.testng.TestNG.privateMain(TestNG.java:1325)
> > [testng] at org.testng.TestNG.main(TestNG.java:1294)
> > [testng]
> > [testng]
> > [testng] ===============================================
> > [testng] Ant test
> > [testng] Tests run: 22291, Failures: 1, Skips: 1
> > [testng] ===============================================
> > [testng]
> > [testng]
> > [testng] ===============================================
> > [testng] htsjdk-tests
> > [testng] Total tests run: 22291, Failures: 1, Skips: 1
> > [testng] ===============================================
> > [testng]
> > [testng] [TestNG] Time taken by
> > org.testng.reporters.JUnitReportReporter@701b9555: 373 ms
> > [testng] [TestNG] Time taken by
> > org.testng.reporters.SuiteHTMLReporter@361b90be: 1395 ms
> > [testng] [TestNG] Time taken by org.testng.reporters.jq.Main@38d591cc:
> > 2560 ms
> > [testng] [TestNG] Time taken by
> > org.testng.reporters.XMLReporter@26538d04: 944 ms
> > [testng] [TestNG] Time taken by [FailedReporter passed=0 failed=0
> > skipped=0]: 18 ms
> > [testng] [TestNG] Time taken by
> > org.testng.reporters.EmailableReporter2@1b66a538: 266 ms
> > [testng] The tests failed.
> > [junitreport] the file
> > /home/lamby/temp/cdt.20151221104713.yWL3WPWVr4/htsjdk-1.138+dfsg.1/dist/test/testng-failed.xml
> > is not a valid testsuite XML document
> > [junitreport] the file
> > /home/lamby/temp/cdt.20151221104713.yWL3WPWVr4/htsjdk-1.138+dfsg.1/dist/test/testng-results.xml
> > is not a valid testsuite XML document
> > [junitreport] Processing
> > /home/lamby/temp/cdt.20151221104713.yWL3WPWVr4/htsjdk-1.138+dfsg.1/dist/test/TESTS-TestSuites.xml
> > to
> > /home/lamby/temp/cdt.20151221104713.yWL3WPWVr4/htsjdk-1.138+dfsg.1/dist/test/junit-noframes.html
> > [junitreport] Loading stylesheet
> > /home/lamby/temp/cdt.20151221104713.yWL3WPWVr4/htsjdk-1.138+dfsg.1/etc/test/junit-noframes.xsl
> > [junitreport] Transform time: 243ms
> > [copy] Copying 1 file to
> > /home/lamby/temp/cdt.20151221104713.yWL3WPWVr4/htsjdk-1.138+dfsg.1/dist/test
> >
> > BUILD FAILED
> >
> > /home/lamby/temp/cdt.20151221104713.yWL3WPWVr4/htsjdk-1.138+dfsg.1/build.xml:151:
> > There were failed unit tests
> >
> > Total time: 6 minutes 39 seconds
> > dh_auto_build: ant -Dant.build.javac.source=1.5
> > -Dant.build.javac.target=1.5 -Ddebug=true test returned exit code 1
> > debian/rules:24: recipe for target 'override_dh_auto_test' failed
> > make[1]: *** [override_dh_auto_test] Error 2
> > make[1]: Leaving directory
> > '/home/lamby/temp/cdt.20151221104713.yWL3WPWVr4/htsjdk-1.138+dfsg.1'
> > debian/rules:10: recipe for target 'build' failed
> > make: *** [build] Error 2
> >
> > [..]
> >
> > The full build log is attached.
> >
> >
> > Regards,
> >
> > --
> > ,''`.
> > : :' : Chris Lamb
> > `. `'` la...@debian.org / chris-lamb.co.uk
> > `-
>
>
> > _______________________________________________
> > Debian-med-packaging mailing list
> > debian-med-packag...@lists.alioth.debian.org
> > http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging
>
>
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