Hi Andreas, Thansk for the feedback.
On 07/04/2015 02:44 PM, Andreas Tille wrote: > while I have not dealt with the libgenome-perl package before I think > your suggestion to hand over /usr/bin/gmt to the gmt package sounds > reaosnable. The package has a quite low popcon value and in my naive > view the main focus is the Perl module and the accompanying scripts > might (or might not - please correct me if I'm wrong) have a minor > importance. > > So I propose the following solution: > > 1. install the gmt script to > /usr/lib/debian-med/bin/gmt > 2. ln -s /usr/lib/debian-med/bin/gmt /usr/bin/genome-module-tools > 3. suggest users of Debian Med to add in front of PATH > > The last is provided by med-config (>= 2.1). This is the same solution > as it is done in plink 1.07-6 which was just uploaded to unstable > (formerly tested in experimental). Users are informed about this in > NEWS.Debian. > > If you agree to this solution I'll upload it that way. Yes, please. Based on the popcon scores my preference is also to rename the binary in libgnome-perl. The GMT upstream authors also argue that since they've been using the name since the 1980s they use has set precedence. > BTW, has Debian > Perl team set ACLs to enable me commiting the changes in Git? I'm not sure. But I'm a member of the Perl team too, so if you can't commit yourself I'm willing to do that too. > Kind regards > > Andreas. Kind Regards, Bas > On Fri, Jul 03, 2015 at 10:11:49PM +0200, Sebastiaan Couwenberg wrote: >> Control: forwarded -1 https://gmt.soest.hawaii.edu/issues/723 >> >> Hi Andreas, >> >> Thanks for the comprehensive followup. >> >> I've uploaded a new revision of gmt to experimental that addresses some >> of the issues. >> >> On 06/30/2015 02:16 AM, Andreas Beckmann wrote: >>> * libgenome-perl >>> >>> Filelist libgenome-perl vs. gmt: >>> >>> usr/bin/gmt >>> >>> Filelist libgenome-perl vs. gmt-common: >>> >>> usr/share/man/man1/gmt.1.gz >> >> This is the most serious conflict to resolve. I've contacted the >> libgenome-perl maintainers [1], but I've not received a reply yet. >> >> I've put debian-med@ in the CC as they seem the most interested in the >> libgenome-perl package. Please share your opinion on this conflict. >> >> I've also contacted the GMT upstream developers to raise the issue of >> these conflicts between GMT 5 and other projects. [2] >> >> [1] https://lists.debian.org/debian-gis/2015/06/msg00119.html >> [2] https://gmt.soest.hawaii.edu/issues/723 >> >>> * libpsl-dev >>> >>> [...] >>> >>> Filelist libpsl-dev vs. libgmt-dev: >>> >>> usr/lib/x86_64-linux-gnu/libpsl.so >> >> The libpsl & gmt packages use different a SONAME. To ensure dependencies >> on the GMT libpsl it's bundled with libgmt in the libgmt5 package. >> >> To resolve the conflict I'm considering renaming the GMT libpsl to >> libgmt-psl. >> >> I've CC'ed the libpsl maintainers, and I would like to ask your opinion >> on this conflict too. >> >>> * turnin-ng >>> >>> [...] >>> >>> Filelist turnin-ng vs. gmt-common: >>> >>> usr/share/man/man1/project.1.g >>> >>> * pslib-dev >>> >>> [...] >>> >>> Filelist pslib-dev vs. gmt-common: >>> >>> usr/share/man/man3/pslib.3.gz >> >> These man page issues should be resolved with the Conflicts that were >> added in gmt (5.1.2+dfsg1-1~exp5). >> >> Kind Regards, >> >> Bas >> >> -- >> GPG Key ID: 4096R/6750F10AE88D4AF1 >> Fingerprint: 8182 DE41 7056 408D 6146 50D1 6750 F10A E88D 4AF1 >> >> >> -- >> To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org >> with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org >> Archive: https://lists.debian.org/5596ec85.4070...@xs4all.nl >> >> > -- GPG Key ID: 4096R/6750F10AE88D4AF1 Fingerprint: 8182 DE41 7056 408D 6146 50D1 6750 F10A E88D 4AF1 -- To UNSUBSCRIBE, email to debian-bugs-rc-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org
