Your message dated Wed, 27 Feb 2013 16:17:41 +0000 with message-id <[email protected]> and subject line Bug#700525: fixed in sundials 2.5.0-3 has caused the Debian Bug report #700525, regarding sundials: several binary packages not linked properly against blas and lapack to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 700525: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=700525 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Package: sundials Version: 2.5.0-1 Severity: normal even though lapack is in the build dependencies and is picked up by the configure step it is not linked against the libraries that need it and is thus also lacking a binary dependency: ldd -r /usr/lib/libsundials_cvodes.so.2 linux-vdso.so.1 => (0x00007fff77dff000) /usr/lib/libeatmydata/libeatmydata.so (0x00007f8a152e4000) /usr/lib/cowdancer/libcowdancer.so (0x00007f8a150e0000) libm.so.6 => /lib/x86_64-linux-gnu/libm.so.6 (0x00007f8a14e5b000) libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007f8a14ad1000) libdl.so.2 => /lib/x86_64-linux-gnu/libdl.so.2 (0x00007f8a148cd000) /lib64/ld-linux-x86-64.so.2 (0x00007f8a1571c000) undefined symbol: dcopy_ (/usr/lib/libsundials_cvodes.so.2) undefined symbol: dscal_ (/usr/lib/libsundials_cvodes.so.2) undefined symbol: dgbtrs_ (/usr/lib/libsundials_cvodes.so.2) undefined symbol: dgbtrf_ (/usr/lib/libsundials_cvodes.so.2) undefined symbol: dgetrf_ (/usr/lib/libsundials_cvodes.so.2) undefined symbol: dgetrs_ (/usr/lib/libsundials_cvodes.so.2) see also: https://bugs.launchpad.net/ubuntu/+source/sundials/+bug/1124062
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--- Begin Message ---Source: sundials Source-Version: 2.5.0-3 We believe that the bug you reported is fixed in the latest version of sundials, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Sébastien Villemot <[email protected]> (supplier of updated sundials package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Wed, 27 Feb 2013 16:58:32 +0100 Source: sundials Binary: libsundials-serial libsundials-cvode1 libsundials-cvodes2 libsundials-ida2 libsundials-idas0 libsundials-kinsol1 libsundials-nvecserial0 libsundials-serial-dev octave-sundials Architecture: source amd64 Version: 2.5.0-3 Distribution: unstable Urgency: low Maintainer: Debian Science Team <[email protected]> Changed-By: Sébastien Villemot <[email protected]> Description: libsundials-cvode1 - ordinary differentialequation solver (SUNDIALS library) libsundials-cvodes2 - ODE solver with sensistivity analysis (SUNDIALS library) libsundials-ida2 - differential-algebraic system solver (SUNDIALS library) libsundials-idas0 - IDA solver with sensitivity capabilities (SUNDIALS library) libsundials-kinsol1 - KINSOL solver (SUNDIALS library) libsundials-nvecserial0 - vector operations library (SUNDIALS library) libsundials-serial - SUit of Nonlinear and DIfferential/ALgebraic equation Solvers libsundials-serial-dev - SUNDIALS development files octave-sundials - SUNDIALS for octave Closes: 700525 Changes: sundials (2.5.0-3) unstable; urgency=low . * Team upload. * Revert changes from experimental version which inadvertently made it into the previous upload. * Improve the fix for missing BLAS and LAPACK dependencies (closes: #700525) + no longer pass BLAS and LAPACK through LDFLAGS + link-blas-lapack.patch: new patch which rather adds the dependencies at the libtool link level + add missing dependency of libsundials-serial-dev on libblas-dev and liblapack-dev * Fix the dependency of octave-sundials on octave. Checksums-Sha1: d1fb018c3d7fef149ac082b070515f423cabbf74 2614 sundials_2.5.0-3.dsc d089c6f1b649d905a0b600801398cc2f8870994d 63058 sundials_2.5.0-3.diff.gz 5d9636aadbbd29f40bc279d32946d2a4cdd12a10 8538 libsundials-serial_2.5.0-3_amd64.deb 451a52c08930362cf9f60cbff08659a61b891f4a 61794 libsundials-cvode1_2.5.0-3_amd64.deb 63cbf5d2a029c015beb35a7c196eec2288fb9596 100136 libsundials-cvodes2_2.5.0-3_amd64.deb d60af43c74ea048b3068f8cedd4778a54d80b6aa 58322 libsundials-ida2_2.5.0-3_amd64.deb cc296df6a33239ccd8f9c0f6d352c8665f820e1a 96840 libsundials-idas0_2.5.0-3_amd64.deb dcc0a49022ea4d7853e6b71f10ac053c7b2d3288 47130 libsundials-kinsol1_2.5.0-3_amd64.deb 219b97817185b7f4f233baded57df9e718114d75 16272 libsundials-nvecserial0_2.5.0-3_amd64.deb 59195f9e276895e5f1a6ff9a6c39a2a75b3f8143 942698 libsundials-serial-dev_2.5.0-3_amd64.deb 084d2c18dc78ab1b276703654317fdc16656a995 379906 octave-sundials_2.5.0-3_amd64.deb Checksums-Sha256: 2b847d1d5c08c998ecdc945eb264b38b3843f5c1f94e20cb5dbbf3631b96d5d4 2614 sundials_2.5.0-3.dsc 2d5475169a6348965cba25262aefa24e8ac92cea6775b45e7723e8452e7fa867 63058 sundials_2.5.0-3.diff.gz f7db3d2f83449bd990c132ce0833e73d0d753dc029ed49a6223ca8d86784b80b 8538 libsundials-serial_2.5.0-3_amd64.deb 44def709f799dc84e90c649c6bca3d934be4f2e4c665e7fabf9b17341504c908 61794 libsundials-cvode1_2.5.0-3_amd64.deb a7552aa09fdf5ca0055ec0b884af6c269fe7aabc4077e6b8382b560bd0fc5314 100136 libsundials-cvodes2_2.5.0-3_amd64.deb 9de4445abaa63ba758a2926c9992fb5c3c084be4accfe5625064b8905c05d758 58322 libsundials-ida2_2.5.0-3_amd64.deb adb280e90a06c49f8274b0768d982d50b77cba5f63ec62bba451bd06be9063f4 96840 libsundials-idas0_2.5.0-3_amd64.deb a82b94472b11205a21e5f21c8b99a389f716cc8337722752a559165a1800f06f 47130 libsundials-kinsol1_2.5.0-3_amd64.deb 8cd19aaceaea22e789a3c056242dc840be96a50fc816fb65035c5c9109990ea5 16272 libsundials-nvecserial0_2.5.0-3_amd64.deb e52851e0b64309c1cff7d6b61cac8e1ba5e3f4d7966e42043f761c4d6d37662e 942698 libsundials-serial-dev_2.5.0-3_amd64.deb 4d2971fa1dc4195e88e18c74dc2780a1e17afa5fb682d7e3fcdf8bf5c1fb3cbe 379906 octave-sundials_2.5.0-3_amd64.deb Files: 50b790caa67ee2c17ad83ad005dc1e49 2614 libs optional sundials_2.5.0-3.dsc ae53d35c3f916efd9b83ca571deadd04 63058 libs optional sundials_2.5.0-3.diff.gz a1f30338925659358ff79c43f0336f69 8538 libs optional libsundials-serial_2.5.0-3_amd64.deb 18302bb476e376e7d094e5554aeeb19c 61794 libs optional libsundials-cvode1_2.5.0-3_amd64.deb 735e8bc4960120bdc2049e2e7fee4c54 100136 libs optional libsundials-cvodes2_2.5.0-3_amd64.deb 47ae20ddd0b172529c2218ade9d1c84d 58322 libs optional libsundials-ida2_2.5.0-3_amd64.deb 784f2879858acfab406e6636c5b38a27 96840 libs optional libsundials-idas0_2.5.0-3_amd64.deb 263ff43ff8181c2f3dc4446fce746a11 47130 libs optional libsundials-kinsol1_2.5.0-3_amd64.deb bb34e55979e2ebd07af2577d134d90be 16272 libs optional libsundials-nvecserial0_2.5.0-3_amd64.deb a62f86945328f39ab3aa56caaacceec3 942698 libdevel optional libsundials-serial-dev_2.5.0-3_amd64.deb 3b63aea1667cd0dfdc51526d3f94bc89 379906 libs optional octave-sundials_2.5.0-3_amd64.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.12 (GNU/Linux) iQIcBAEBCAAGBQJRLi9sAAoJECzs6TUOzr5KTGcP/2UVuvn0P5Mfcve8LZ91wAI8 t5V9RX8rm7m2HznQuhJeU9CaiVbd1jCbOpk1FWDNrjgayS9HuKEqD24o4evntt0r NP0C+G0fXgmk0Ao5qetVGIoaedtA7SyxWB3iEwWjKzjiV2IbzbYGErz+C2TkKRcZ Bw9c+PMsdP34hh65eDSbYZEH/bPQxSyFF1q/RKPfJIQ37qAnGWzFT7B2l379KDof USsDPKRdfNMvh+CykiT4LZGer5Glq8uTlsWqrWWImeXQeKz2h+afIOM8DzBY3Ia9 /1rJQpfYDCBqNI2hIoVSTCXW5MXYajpuRFwgvQRwMFzpchO9vR48bVzpR6KLN19G b6hP7WFjpGKMvKvH+e5IfkQR2UAHp0xoW7Zm/ZPC2RHUd3MJcc/AWfne0tRCURzi xbegRLdleo+Eizy39c8OV3vCvyObPGW7G6ERrvjNiagSW81RYIOTPgLlW6KFgmU7 BN0Gxzziw0TRtEjIWLPR8jukwcUBmGrK+uL0bgjnGZ+ySaNRJWRDiCAn8V8xoHK+ DK0JkogNCn6c2gCvn0nRWqCFwj7StxFiqjGHdUIL60giCzOoDRwj1eZzuldye8nt HAM5TYShv0D5PIbjdbqqHs4w8q+b+sl/tflzeINKmMZz9kQyPbu4MRrYIq+MRKSL puCFmPDjZQN5OUANf1Qh =jJVO -----END PGP SIGNATURE-----
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