Your message dated Thu, 25 Jun 2009 13:29:13 -0700
with message-id <20090625202913.ga2...@ofb.net>
and subject line closure of #531419
has caused the Debian Bug report #531419,
regarding gromacs: FTBFS: error: couldn't find library libmd_mpi_d_openmpi.so.5
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
531419: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=531419
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: gromacs
Version: 4.0.5-2
Severity: serious
Hi,
There was an error while trying to autobuild your package:
> Start Time: 20090601-0920
[...]
> Build-Depends: debhelper (>= 5.0.0), dpatch, libfftw3-dev, libmpich1.0-dev
> (>= 1.2.7-6), lam4-dev, libopenmpi-dev (>= 1.2.4-5) [alpha amd64 i386 ia64
> powerpc kfreebsd-i386 kfreebsd-amd64 hurd-i386], lesstif2-dev, libxt-dev,
> libsm-dev, libice-dev, libxext-dev, libxp-dev, libx11-dev, zlib1g-dev,
> libgsl0-dev, gfortran [alpha], autotools-dev (>= 20070725.1), autoconf,
> automake (>= 1:1.10), libtool
[...]
> Toolchain package versions: libc6-dev_2.9-13 linux-libc-dev_2.6.29-5
> g++-4.3_4.3.3-10 gcc-4.3_4.3.3-10 binutils_2.19.1-1 libstdc++6_4.4.0-5
> libstdc++6-4.3-dev_4.3.3-10
>
[...]
> dh_shlibdeps -pgromacs-mpich -L gromacs-mpich -l debian/gromacs-mpich/usr/lib
> dpkg-shlibdeps: warning: dependency on libnsl.so.1 could be avoided if
> "debian/gromacs-mpich/usr/lib/libmd_mpi_d_mpich.so.5.0.0
> debian/gromacs-mpich/usr/lib/libgmx_mpi_d_mpich.so.5.0.0
> debian/gromacs-mpich/usr/lib/libmd_mpi_mpich.so.5.0.0
> debian/gromacs-mpich/usr/bin/mdrun_mpi.mpich
> debian/gromacs-mpich/usr/bin/mdrun_mpi_d.mpich
> debian/gromacs-mpich/usr/lib/libgmx_mpi_mpich.so.5.0.0" were not uselessly
> linked against it (they use none of its symbols).
> dpkg-shlibdeps: warning: dependency on librt.so.1 could be avoided if
> "debian/gromacs-mpich/usr/lib/libmd_mpi_d_mpich.so.5.0.0
> debian/gromacs-mpich/usr/lib/libgmx_mpi_d_mpich.so.5.0.0
> debian/gromacs-mpich/usr/lib/libmd_mpi_mpich.so.5.0.0
> debian/gromacs-mpich/usr/bin/mdrun_mpi.mpich
> debian/gromacs-mpich/usr/bin/mdrun_mpi_d.mpich
> debian/gromacs-mpich/usr/lib/libgmx_mpi_mpich.so.5.0.0" were not uselessly
> linked against it (they use none of its symbols).
> dh_shlibdeps -pgromacs-openmpi -L gromacs-openmpi -l
> debian/gromacs-openmpi/usr/lib
> dpkg-shlibdeps: error: couldn't find library libmd_mpi_d_openmpi.so.5 needed
> by debian/gromacs-openmpi/usr/bin/mdrun_mpi_d.openmpi (ELF format:
> 'elf64-x86-64'; RPATH: '').
> Note: libraries are not searched in other binary packages that do not have
> any shlibs or symbols file.
> To help dpkg-shlibdeps find private libraries, you might need to set
> LD_LIBRARY_PATH.
> dh_shlibdeps: dpkg-shlibdeps returned exit code 2
> make: *** [binary-arch] Error 1
> dpkg-buildpackage: error: /usr/bin/fakeroot debian/rules binary-arch gave
> error exit status 2
A full build log can be found at:
http://buildd.debian.org/build.php?arch=amd64&pkg=gromacs&ver=4.0.5-2+b1
Kurt
--- End Message ---
--- Begin Message ---
FTBFS appears solved indirectly by upload of openmpi 1.3.2-3, no gromacs build
failures so far on affected architectures.
--
Nicholas Breen
nbr...@ofb.net
--- End Message ---
