Your message dated Tue, 23 Jun 2009 23:17:34 +0000
with message-id <e1mjff8-0007p7...@ries.debian.org>
and subject line Bug#531522: fixed in openmpi 1.3.2-3
has caused the Debian Bug report #531522,
regarding libopenmpi-dev: mpicc segfaults under fakeroot
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
531522: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=531522
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: gromacs
Version: 4.0.5-2
Severity: serious
Hi,
There was an error while trying to autobuild your package:
> Start Time: 20090601-0920
[...]
> Build-Depends: debhelper (>= 5.0.0), dpatch, libfftw3-dev, libmpich1.0-dev
> (>= 1.2.7-6), lam4-dev, libopenmpi-dev (>= 1.2.4-5) [alpha amd64 i386 ia64
> powerpc kfreebsd-i386 kfreebsd-amd64 hurd-i386], lesstif2-dev, libxt-dev,
> libsm-dev, libice-dev, libxext-dev, libxp-dev, libx11-dev, zlib1g-dev,
> libgsl0-dev, gfortran [alpha], autotools-dev (>= 20070725.1), autoconf,
> automake (>= 1:1.10), libtool
[...]
> Toolchain package versions: libc6-dev_2.9-13 linux-libc-dev_2.6.29-5
> g++-4.3_4.3.3-10 gcc-4.3_4.3.3-10 binutils_2.19.1-1 libstdc++6_4.4.0-5
> libstdc++6-4.3-dev_4.3.3-10
>
[...]
> dh_shlibdeps -pgromacs-mpich -L gromacs-mpich -l debian/gromacs-mpich/usr/lib
> dpkg-shlibdeps: warning: dependency on libnsl.so.1 could be avoided if
> "debian/gromacs-mpich/usr/lib/libmd_mpi_d_mpich.so.5.0.0
> debian/gromacs-mpich/usr/lib/libgmx_mpi_d_mpich.so.5.0.0
> debian/gromacs-mpich/usr/lib/libmd_mpi_mpich.so.5.0.0
> debian/gromacs-mpich/usr/bin/mdrun_mpi.mpich
> debian/gromacs-mpich/usr/bin/mdrun_mpi_d.mpich
> debian/gromacs-mpich/usr/lib/libgmx_mpi_mpich.so.5.0.0" were not uselessly
> linked against it (they use none of its symbols).
> dpkg-shlibdeps: warning: dependency on librt.so.1 could be avoided if
> "debian/gromacs-mpich/usr/lib/libmd_mpi_d_mpich.so.5.0.0
> debian/gromacs-mpich/usr/lib/libgmx_mpi_d_mpich.so.5.0.0
> debian/gromacs-mpich/usr/lib/libmd_mpi_mpich.so.5.0.0
> debian/gromacs-mpich/usr/bin/mdrun_mpi.mpich
> debian/gromacs-mpich/usr/bin/mdrun_mpi_d.mpich
> debian/gromacs-mpich/usr/lib/libgmx_mpi_mpich.so.5.0.0" were not uselessly
> linked against it (they use none of its symbols).
> dh_shlibdeps -pgromacs-openmpi -L gromacs-openmpi -l
> debian/gromacs-openmpi/usr/lib
> dpkg-shlibdeps: error: couldn't find library libmd_mpi_d_openmpi.so.5 needed
> by debian/gromacs-openmpi/usr/bin/mdrun_mpi_d.openmpi (ELF format:
> 'elf64-x86-64'; RPATH: '').
> Note: libraries are not searched in other binary packages that do not have
> any shlibs or symbols file.
> To help dpkg-shlibdeps find private libraries, you might need to set
> LD_LIBRARY_PATH.
> dh_shlibdeps: dpkg-shlibdeps returned exit code 2
> make: *** [binary-arch] Error 1
> dpkg-buildpackage: error: /usr/bin/fakeroot debian/rules binary-arch gave
> error exit status 2
A full build log can be found at:
http://buildd.debian.org/build.php?arch=amd64&pkg=gromacs&ver=4.0.5-2+b1
Kurt
--- End Message ---
--- Begin Message ---
Source: openmpi
Source-Version: 1.3.2-3
We believe that the bug you reported is fixed in the latest version of
openmpi, which is due to be installed in the Debian FTP archive:
libopenmpi-dbg_1.3.2-3_amd64.deb
to pool/main/o/openmpi/libopenmpi-dbg_1.3.2-3_amd64.deb
libopenmpi-dev_1.3.2-3_amd64.deb
to pool/main/o/openmpi/libopenmpi-dev_1.3.2-3_amd64.deb
libopenmpi1.3_1.3.2-3_amd64.deb
to pool/main/o/openmpi/libopenmpi1.3_1.3.2-3_amd64.deb
openmpi-bin_1.3.2-3_amd64.deb
to pool/main/o/openmpi/openmpi-bin_1.3.2-3_amd64.deb
openmpi-common_1.3.2-3_all.deb
to pool/main/o/openmpi/openmpi-common_1.3.2-3_all.deb
openmpi-doc_1.3.2-3_all.deb
to pool/main/o/openmpi/openmpi-doc_1.3.2-3_all.deb
openmpi_1.3.2-3.diff.gz
to pool/main/o/openmpi/openmpi_1.3.2-3.diff.gz
openmpi_1.3.2-3.dsc
to pool/main/o/openmpi/openmpi_1.3.2-3.dsc
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 531...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Manuel Prinz <man...@debian.org> (supplier of updated openmpi package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Wed, 24 Jun 2009 00:33:23 +0200
Source: openmpi
Binary: openmpi-bin libopenmpi-dev libopenmpi1.3 openmpi-common openmpi-doc
libopenmpi-dbg
Architecture: source amd64 all
Version: 1.3.2-3
Distribution: unstable
Urgency: low
Maintainer: Debian OpenMPI Maintainers
<pkg-openmpi-maintain...@lists.alioth.debian.org>
Changed-By: Manuel Prinz <man...@debian.org>
Description:
libopenmpi-dbg - high performance message passing library -- debug library
libopenmpi-dev - high performance message passing library -- header files
libopenmpi1.3 - high performance message passing library -- shared library
openmpi-bin - high performance message passing library -- binaries
openmpi-common - high performance message passing library -- common files
openmpi-doc - high performance message passing library -- man pages
Closes: 531184 531522 532008 532910
Changes:
openmpi (1.3.2-3) unstable; urgency=low
.
* Re-uploading, as last upload was not successful.
* Acknowledgement of NMU. Thanks to Steve M. Robbins for the patches and
NMUs! Closes: #531522.
* Removing ancient mpicc, mpiCC and mpiexec master alternatives in preinst.
Closes: #531184, #532008, #532910.
* debian/control: Bumped Standards-Version. No changes needed.
* Fixed typo in README.Debian of openmpi-bin.
Checksums-Sha1:
2ec16de9b730b42bfb2df47a404458db2ce0f400 1544 openmpi_1.3.2-3.dsc
4eac4433ce12e37744ebd7cae6a8f9a1d72dfb43 21521 openmpi_1.3.2-3.diff.gz
b7c5b7626ce51238d319bf2582ac962f337467ad 136734 openmpi-bin_1.3.2-3_amd64.deb
1dbb6ecf3cfd7da7b5e29542e8eb99e1c529977c 2564720
libopenmpi-dev_1.3.2-3_amd64.deb
2867b62e6f51e1628b9dfa7125daa30c8aa2bc9b 1253426
libopenmpi1.3_1.3.2-3_amd64.deb
f72411bd3f1cef3e116cbfec71e660ff254953c5 5310924
libopenmpi-dbg_1.3.2-3_amd64.deb
3dfbf8fafd44f1164c513be6676675844cec5d7c 78216 openmpi-common_1.3.2-3_all.deb
a379e2bc3626ceeacb99bed15f950541a0cd7319 462288 openmpi-doc_1.3.2-3_all.deb
Checksums-Sha256:
52de72a4ae5b9e74007e922246290782d69495cd8bb1b734bcd7eb23353b2473 1544
openmpi_1.3.2-3.dsc
323e240f2d5bb282b82aa0a493dafb19c6f3d5d8f51134c327473df2db086dab 21521
openmpi_1.3.2-3.diff.gz
6402cb5128b8ff4b4298d7440428e726271f9e3edbf4ed5428dce8702aff7417 136734
openmpi-bin_1.3.2-3_amd64.deb
1ab1176ab78e65c8189f26a2b728b46642f3b225e24a88193f31043d84edb8d4 2564720
libopenmpi-dev_1.3.2-3_amd64.deb
54bbcd4b38665776ea7d6836ca6d533d8ff146a0617b6621c36376555a4052ec 1253426
libopenmpi1.3_1.3.2-3_amd64.deb
5a2e667e4d73415ced0d43fac25c0b5c4ec2122e780b23a5ed6e1ca3878b0bcb 5310924
libopenmpi-dbg_1.3.2-3_amd64.deb
7f2cc86a8dcd21aef328f20f5a1060d4e5371e8a17e218487b985c0da0a87dd7 78216
openmpi-common_1.3.2-3_all.deb
2cab58646374673b5d66ed97de1fd8ee76bd79043116be19a5388705e0e92e21 462288
openmpi-doc_1.3.2-3_all.deb
Files:
876d3dc81e371d3e14e4f609054a8382 1544 net extra openmpi_1.3.2-3.dsc
784d2feca029e90900d9d1d8558302d3 21521 net extra openmpi_1.3.2-3.diff.gz
d114862474d0b47804b16ecaa0aac5d8 136734 net extra openmpi-bin_1.3.2-3_amd64.deb
399bb2aebab984ddc883b232a5f6136c 2564720 libdevel extra
libopenmpi-dev_1.3.2-3_amd64.deb
dc5d4a6329dbb70e59b02e7f8cb608be 1253426 libs extra
libopenmpi1.3_1.3.2-3_amd64.deb
725cb9f760cc6c3c12354892e2a37ddb 5310924 debug extra
libopenmpi-dbg_1.3.2-3_amd64.deb
149521a82d1a619e19e180f15adc0cba 78216 net extra openmpi-common_1.3.2-3_all.deb
713317142c5364ea072c7bcef8de34b3 462288 doc extra openmpi-doc_1.3.2-3_all.deb
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--- End Message ---
