Dear all, I have fixed building & packaging on sid: https://github.com/neurodroid/stimfit/commit/7f1f4f98
Best wishes Christoph > On 4 Feb 2025, at 03:24, Alois Schlögl <alois.schlo...@gmail.com> wrote: > > > > > Am 2/4/25 um 01:26 schrieb Matthias Klumpp: >> Am Mo., 3. Feb. 2025 um 18:45 Uhr schrieb Alois Schlögl >> <alois.schlo...@gmail.com>: >> >> [...] >> Dear Matthias, >> >> >> thanks for your offer to help. From my point of view, this would be >> appreciated. >> Please find below my assessment of the state of stimfit in debian: >> >> - It should be possible bring stimfit 0.16.4-1.1 into >> bookworm-backports >> as is. >> >> - Concerning sid, this might be tricky because of the current >> dependency >> on the old distutils. At this time, I'm not positive that I could >> do the >> migration to numpy>=2 and the new distutils within the time frame >> of the >> release of trixie. If you know how to address this, your >> contribution is >> most welcome. >> >> >> Oh wow, this is a lot more than I expected, and that also explains why the >> package isn't in unstable yet... >> I can have a look though! >> >> - What is possible is disabling the embedded python (using >> "./configure >> --disable-python ..."). That's what we call "stimfit-lite" on the >> project homepage https://github.com/neurodroid/stimfit . What I can >> offer is preparing an upload for a stimfit-lite (w/o python >> support) for >> Debian. >> - This would mean that the debian package "python3-stfio" would >> not be >> available. Some of its functionality could be replaced by >> python3-biosig >> <https://packages.debian.org/unstable/python3-biosig> . [1] provides >> some starting points how to do this. However, full compatibility >> is not >> available at this time. >> >> >> Our lab uses python3-stfio specifically to load CED binary CFS files, which >> as far as I know can't be reliably done with any other tool. So, it would be >> neat to keep that support. Migrating Python build systems is just about the >> least fun thing I can imagine, but the Numpy transition might not be too bad >> depending on how stimfit uses it (I have done that in a different project >> and it was simple, however, usage of the API was also fairly basic there). >> >> I'll have a look... >> >> Best, >> Matthias >> >> -- >> I welcome VSRE emails. See http://vsre.info/ > > You should be able to load your CED binary CFS file with the attached script > demo2.py when adapting FILENAME and installing biosig for python like this: > > sudo apt install python3-biosig > > or > sudo apt install libbiosig-dev > # set up your python env > pip install biosig > > # adapt FILENAME in demo2.py and run > python demo2.py > > > If it does not work, let me know > > Alois > > <demo2.py>
