Hi Sascha,
since there are no responses so far I wonder how to proceed with the
package. I need to admit I get a different error when trying to build
the current state of gubbins packaging Git:
gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I../tests
-pthread -g -O2 -fdebug-prefix-map=/build/gubbins-2.1.0=.
-fstack-protector-strong -Wformat -Werror=format-security -c -o
../tests/run_all_tests-run_all_tests.o `test -f '../tests/run_all_tests.c' ||
echo './'`../tests/run_all_tests.c
/bin/bash ../libtool --tag=CC --mode=link gcc -I../tests -pthread -g -O2
-fdebug-prefix-map=/build/gubbins-2.1.0=. -fstack-protector-strong -Wformat
-Werror=format-security -Wl,-z,relro -Wl,-z,now -o run_all_tests
../tests/run_all_tests-check_branch_sequences.o
../tests/run_all_tests-check_gubbins.o
../tests/run_all_tests-check_parse_phylip.o
../tests/run_all_tests-check_snp_searching.o
../tests/run_all_tests-check_snp_sites.o
../tests/run_all_tests-check_vcf_parsing.o
../tests/run_all_tests-helper_methods.o ../tests/run_all_tests-run_all_tests.o
-lcheck libgubbins.la -lz -lm -lrt -lsubunit
libtool: link: gcc -I../tests -pthread -g -O2
-fdebug-prefix-map=/build/gubbins-2.1.0=. -fstack-protector-strong -Wformat
-Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/run_all_tests
../tests/run_all_tests-check_branch_sequences.o
../tests/run_all_tests-check_gubbins.o
../tests/run_all_tests-check_parse_phylip.o
../tests/run_all_tests-check_snp_searching.o
../tests/run_all_tests-check_snp_sites.o
../tests/run_all_tests-check_vcf_parsing.o
../tests/run_all_tests-helper_methods.o ../tests/run_all_tests-run_all_tests.o
-lcheck ./.libs/libgubbins.so -lz -lm -lrt -lsubunit -pthread
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libcheck.a(check.o):
relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a
shared object; recompile with -fPIC
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libcheck.a(check_error.o):
relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a
shared object; recompile with -fPIC
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libcheck.a(check_msg.o):
relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a
shared object; recompile with -fPIC
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libcheck.a(check_pack.o):
relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a
shared object; recompile with -fPIC
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libcheck.a(check_run.o):
relocation R_X86_64_32 against undefined symbol `error_jmp_buffer' can not be
used when making a shared object; recompile with -fPIC
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libcheck.a(check_str.o):
relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a
shared object; recompile with -fPIC
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libcheck.a(check_log.o):
relocation R_X86_64_32S against `.rodata' can not be used when making a shared
object; recompile with -fPIC
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libcheck.a(check_print.o):
relocation R_X86_64_32S against `.rodata' can not be used when making a shared
object; recompile with -fPIC
/usr/bin/ld: final link failed: Nonrepresentable section on output
collect2: error: ld returned 1 exit status
Makefile:742: recipe for target 'run_all_tests' failed
make[4]: *** [run_all_tests] Error 1
Any clue?
Kind regards
Andreas.
--
http://fam-tille.de
