Hello,
It turns out that cmake 3.27 has a different log file
called CMakeConfigureLog.yaml. However, I could not find the error message
in there.
My output is very similar to Florian (at least the last part where the
configuration error is displayed), and I also have a lot of those warnings
for duplicate paths.
Thank you,
Giselle
On Wed, Oct 4, 2023 at 4:41 AM 'Florian Schulze' via deal.II User Group <
dealii@googlegroups.com> wrote:
> Hello,
>
> I get the same configuration error. I don’t find the CMakeError file
> either (maybe it is switched off with a flag?), but can give a few more
> details from the CMake output.
>
> I use a similar deal.II configuration: (cmake
> -DDEAL_II_CXX_FLAGS=-std=c++17 -DDEAL_II_WITH_MPI=ON
> -DDEAL_II_WITH_HDF5=ON -DDEAL_II_WITH_PETSC=ON -DPETSC_DIR=$PETSC_DIR
> -DPETSC_ARCH=arch-darwin-c-debug -DDEAL_II_WITH_SLEPC=ON
> -DSLEPC_DIR=$SLEPC_DIR -DDEAL_II_WITH_P4EST=ON -DP4EST_DIR=$P4EST_DIR)
> I get the following output (shortened a bit, if anything is missing let me
> know!):
>
> […]
>
> /opt/homebrew/Cellar/cmake/3.27.6/bin/cmake -E cmake_link_script
> CMakeFiles/CheckCompilerSetupExec.dir/link.txt --verbose=1
> /Library/Developer/CommandLineTools/usr/bin/c++ -arch arm64 -isysroot
> /Library/Developer/CommandLineTools/SDKs/MacOSX14.0.sdk [....]
> ld: warning: ignoring duplicate libraries: '-ldl', '-lm',
> '/Users/flo/.local/lib/petsc/arch-darwin-c-debug/lib/libdmumps.a',
> '/Users/flo/.local/lib/petsc/arch-darwin-c-debug/lib/libmumps_common.a',
> '/Users/flo/.local/lib/petsc/arch-darwin-c-debug/lib/libpord.a',
> '/opt/homebrew/Cellar/gcc/13.2.0/lib/gcc/current/gcc/aarch64-apple-darwin23/13/libemutls_w.a'
> ld: warning: duplicate LC_RPATH are deprecated
> ('/opt/homebrew/Cellar/gcc/13.2.0/lib/gcc/current/gcc/aarch64-apple-darwin23/13')
> ld: warning: duplicate LC_RPATH are deprecated
> ('/opt/homebrew/Cellar/gcc/13.2.0/lib/gcc/current/gcc')
> ld: warning: duplicate LC_RPATH are deprecated
> ('/opt/homebrew/Cellar/gcc/13.2.0/lib/gcc/current')
> ld: warning: duplicate LC_RPATH are deprecated
> ('/Users/flo/.local/lib/petsc/arch-darwin-c-debug/lib')
> ld: warning: duplicate LC_RPATH are deprecated
> ('/opt/homebrew/Cellar/gcc/13.2.0/lib/gcc/current/gcc/aarch64-apple-darwin23/13')
> ld: warning: duplicate LC_RPATH are deprecated
> ('/opt/homebrew/Cellar/gcc/13.2.0/lib/gcc/current/gcc')
> ld: warning: duplicate LC_RPATH are deprecated
> ('/opt/homebrew/Cellar/gcc/13.2.0/lib/gcc/current')
> ld: warning: duplicate LC_RPATH are deprecated
> ('/Users/flo/.local/lib/petsc/arch-darwin-c-debug/lib')
> ld: multiple errors: duplicate LC_RPATH
> '/opt/homebrew/Cellar/gcc/13.2.0/lib/gcc/current/gcc/aarch64-apple-darwin23/13'
> in
> '/Users/flo/.local/lib/petsc/arch-darwin-c-debug/lib/libscalapack.2.2.1.dylib';
> duplicate LC_RPATH
> '/opt/homebrew/Cellar/gcc/13.2.0/lib/gcc/current/gcc/aarch64-apple-darwin23/13'
> in
> '/Users/flo/.local/lib/petsc/arch-darwin-c-debug/lib/libscalapack.2.2.1.dylib'
> clang: error: linker command failed with exit code 1 (use -v to see
> invocation)
> gmake[2]: *** [CMakeFiles/CheckCompilerSetupExec.dir/build.make:167:
> CheckCompilerSetupExec] Error 1
> gmake[2]: Leaving directory
> '/Users/flo/Documents/PhD/Code/sapphire/dealii-9.5.1/build/check_compiler_setup/DEAL_II_HAVE_USABLE_FLAGS_DEBUG'
> gmake[1]: *** [CMakeFiles/Makefile2:86:
> CMakeFiles/CheckCompilerSetupExec.dir/all] Error 2
> gmake[1]: Leaving directory
> '/Users/flo/Documents/PhD/Code/sapphire/dealii-9.5.1/build/check_compiler_setup/DEAL_II_HAVE_USABLE_FLAGS_DEBUG'
> gmake: *** [Makefile:94: all] Error 2
>
>
> CMake Error at cmake/setup_finalize.cmake:126 (message):
>
>
> Configuration error: Cannot compile a test program with the final set
> of
> compiler and linker flags:
> CXX flags (DEBUG): -openmp-simd -ftemplate-depth=1024 -std=c++17
> -ffp-exception-behavior=strict -Og -ggdb -Wa,--compress-debug-sections
> LD flags (DEBUG): -ggdb
> LIBRARIES (DEBUG): ;
>
>
>
>
> Call Stack (most recent call first):
> cmake/macros/macro_verbose_include.cmake:19 (include)
> CMakeLists.txt:123 (verbose_include)
>
>
> -- Configuring incomplete, errors occurred!
>
>
>
> Some details on my setup: I use MacOS 14.0 (just updated) on a M1 MacBook
> (arm64-apple-darwin23.0.0). My compiler is the `CommandLineTools` clang
> compiler (Apple clang version 15.0.0). I installed gcc-13, cmake (and some
> packages) with home-brew.
> PETSc-v3.20.0, SLEPc-v3.20.0 and p4est-v2.8.5 installed in '~/.local/lib‘.
> I try to compile the deal.II version 9.5.1.
>
> I hope this gives sufficient information, and we are able to identify the
> problem (probably either with PETSc or the linking of libraries).
>
> Thank you in advance!
>
> Best,
> Florian
>
> > Am 04.10.2023 um 06:39 schrieb Wolfgang Bangerth <bange...@colostate.edu
> >:
> >
> > On 10/3/23 19:44, Giselle Sosa Jones wrote:
> >> **
> >> I do not have this file in my CMakeFiles directory. I was looking for
> it in
> >> the other directories, but could not find it...
> >
> > At least with my version of cmake (version 3.22), errors are written into
> > CMakeFiles/CMakeError.log in the directory where you called cmake. (In
> my previous email, I had a file suffix of .txt, but it is really .log.) If
> you have a different cmake version, perhaps the error is elsewhere --
> you'll have to search through files to see where compiler errors are
> recorded.
> >
> > I'm afraid there is little anyone can say about the specific reason why
> it doesn't work for you without that information :-(
> >
> > Best
> > Wolfgang
> >
> > --
> > ------------------------------------------------------------------------
> > Wolfgang Bangerth email: bange...@colostate.edu
> > www: http://www.math.colostate.edu/~bangerth/
> >
> >
> > --
> > The deal.II project is located at http://www.dealii.org/
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>
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