No login node is intel-broadwell and compute node is intel-skylake. Problem
is that the supercomputer I am compiling on has no way to access compute
node (interactive job) directly for compiling. I am not sure if dealii
allows for cross compilation.
On Fri, Apr 5, 2019 at 1:44 PM Bruno Turcksin <bruno.turck...@gmail.com>
wrote:
> Phani,
>
> Can you try the same configuration with master? Until recently there was
> no way to disable the simd pragma (you could only disable the intrinsics).
> Do the login and the compute node have the same architecture?
>
> Best,
>
> Bruno
>
> On Friday, April 5, 2019 at 1:21:45 PM UTC-4, Phani Motamarri wrote:
>>
>> Hi Daniel,
>>
>> Many thanks for the reply. As you suggested, I tried a minimal
>> configuration just using
>> *cmake -DDEAL_II_ALLOW_AUTODETECTION=OFF
>> -DDEAL_II_ALLOW_PLATFORM_INTROSPECTION=OFF -DCMAKE_C_COMPILER=cc
>> -DCMAKE_CXX_COMPILER=CC -DCMAKE_Fortran_COMPILER=ftn -DMPI_C_COMPILER=cc
>> -DMPI_CXX_COMPILER=CC -DMPI_Fortran_COMPILER=ftn
>> -DCMAKE_INSTALL_PREFIX=/dealii/intel18_double_dealii9.0.1 ../dealii-9.0.1*
>>
>>
>> I still get the same error. I am attaching the detailed.log and make
>> output by doing make VERBOSE=1.
>> I am wondering if I am missing anything.
>>
>> Thanks and Regards
>> Phani
>>
>>
>>
>> On Wed, Apr 3, 2019 at 8:24 AM Daniel Arndt <
>> daniel.ar...@iwr.uni-heidelberg.de> wrote:
>>
>>> Phani,
>>>
>>> *[...]*
>>>>
>>>> *Please verify that both the operating system and the processor support
>>>> Intel(R) AVX512DQ, AVX512F, AVX512CD, AVX512BW and AVX512VL instructions.*
>>>>
>>>> *source/numerics/CMakeFiles/obj_numerics_inst.dir/build.make:91: recipe
>>>> for target 'source/numerics/data_out_dof_data.inst' failed*
>>>> *[...]*
>>>>
>>>
>>> Can you attach your detailed.log? How does the failing compiler call
>>> look like (make VERBOSE=1)?
>>>
>>>
>>>>
>>>> The compile line script which I am using to install dealii is as
>>>> follows:
>>>>
>>>> *cmake -DCMAKE_BUILD_TYPE=Release -DDEAL_II_WITH_THREADS=OFF
>>>> -DDEAL_II_ALLOW_PLATFORM_INTROSPECTION=OFF -DCMAKE_C_COMPILER=cc
>>>> -DCMAKE_CXX_COMPILER=CC -DCMAKE_Fortran_COMPILER=ftn -DMPI_C_COMPILER=cc
>>>> -DMPI_CXX_COMPILER=CC -DMPI_Fortran_COMPILER=ftn
>>>> -DDEAL_II_CXX_FLAGS_RELEASE="-O3" -DDEAL_II_COMPONENT_EXAMPLES=OFF
>>>> -DDEAL_II_WITH_MPI=ON -DDEAL_II_WITH_64BIT_INDICES=ON
>>>> -DP4EST_DIR="/p4est/intel18.0_p4est_2.0" -DDEAL_II_WITH_PETSC=ON
>>>> -DPETSC_DIR=/petsc/intel_petsc3.9.4_double_64bit -DPETSC_ARCH=
>>>> -DDEAL_II_WITH_SLEPC=ON -DSLEPC_DIR=/slepc/intel_slepc3.9.2_double_64bit
>>>> -DLAPACK_FOUND=true -DLAPACK_DIR="${MKLROOT}/lib/intel64"
>>>> -DLAPACK_LIBRARIES="${MKLROOT}/lib/intel64/libmkl_intel_lp64.so;${MKLROOT}/lib/intel64/libmkl_core.so;${MKLROOT}/lib/intel64/libmkl_intel_thread.so"
>>>> -DLAPACK_LINKER_FLAGS="-liomp5 -lpthread -lm -ldl"
>>>> -DSCALAPACK_DIR="${MKLROOT}/lib/intel64"
>>>> -DSCALAPACK_LIBRARIES="${MKLROOT}/lib/intel64/libmkl_scalapack_lp64.so;${MKLROOT}/lib/intel64/libmkl_blacs_intelmpi_lp64.so"
>>>> -DCMAKE_INSTALL_PREFIX=/dealii/intel18_double_dealii9.0.1 ../dealii-9.0.1*
>>>>
>>>> I am wondering what am I missing during my installation process on this
>>>> Cray machine. As you can see from above I do not give any AVX flags as
>>>> compilation flags. I only use -O3 flag. I am using login nodes for
>>>> compiling on a Cray supercomputer.
>>>>
>>>
>>> If I were you, I would try a minimal configuration first, something like
>>>
>>> *cmake -DDEAL_II_ALLOW_AUTODETECTION=OFF
>>> -DDEAL_II_ALLOW_PLATFORM_INTROSPECTION=OFF -DCMAKE_C_COMPILER=cc
>>> -DCMAKE_CXX_COMPILER=CC -DCMAKE_Fortran_COMPILER=ftn -DMPI_C_COMPILER=cc
>>> -DMPI_CXX_COMPILER=CC -DMPI_Fortran_COMPILER=ftn
>>> -DCMAKE_INSTALL_PREFIX=/dealii/intel18_double_dealii9.0.1 ../dealii-9.0.1*
>>>
>>> It might also a good idea to see if you get the same error using the
>>> master branch.
>>>
>>> Best,
>>> Daniel
>>>
>>> --
>>> The deal.II project is located at http://www.dealii.org/
>>> For mailing list/forum options, see
>>> https://groups.google.com/d/forum/dealii?hl=en
>>> ---
>>> You received this message because you are subscribed to the Google
>>> Groups "deal.II User Group" group.
>>> To unsubscribe from this group and stop receiving emails from it, send
>>> an email to dealii+unsubscr...@googlegroups.com.
>>> For more options, visit https://groups.google.com/d/optout.
>>>
>> --
> The deal.II project is located at http://www.dealii.org/
> For mailing list/forum options, see
> https://groups.google.com/d/forum/dealii?hl=en
> ---
> You received this message because you are subscribed to the Google Groups
> "deal.II User Group" group.
> To unsubscribe from this group and stop receiving emails from it, send an
> email to dealii+unsubscr...@googlegroups.com.
> For more options, visit https://groups.google.com/d/optout.
>
--
The deal.II project is located at http://www.dealii.org/
For mailing list/forum options, see
https://groups.google.com/d/forum/dealii?hl=en
---
You received this message because you are subscribed to the Google Groups
"deal.II User Group" group.
To unsubscribe from this group and stop receiving emails from it, send an email
to dealii+unsubscr...@googlegroups.com.
For more options, visit https://groups.google.com/d/optout.
