Thank you Daniel for the reply. It was my bad of pointing to the wrong
scalapack path. Now the configure step passes. When I start doing "make" ,
I get the following error after finishing 35% of the build process:
*Scanning dependencies of target obj_sundials_release*
*[ 34%] Building CXX object
source/sundials/CMakeFiles/obj_sundials_release.dir/arkode.cc.o*
*[ 34%] Building CXX object
source/sundials/CMakeFiles/obj_sundials_release.dir/ida.cc.o*
*[ 34%] Building CXX object
source/sundials/CMakeFiles/obj_sundials_release.dir/copy.cc.o*
*[ 35%] Building CXX object
source/sundials/CMakeFiles/obj_sundials_release.dir/kinsol.cc.o*
*[ 35%] Built target obj_sundials_release*
*[ 35%] Generating data_out_dof_data.inst*
*Please verify that both the operating system and the processor support
Intel(R) AVX512DQ, AVX512F, AVX512CD, AVX512BW and AVX512VL instructions.*
*source/numerics/CMakeFiles/obj_numerics_inst.dir/build.make:91: recipe for
target 'source/numerics/data_out_dof_data.inst' failed*
*make[2]: *** [source/numerics/data_out_dof_data.inst] Error 1*
*CMakeFiles/Makefile2:1796: recipe for target
'source/numerics/CMakeFiles/obj_numerics_inst.dir/all' failed*
*make[1]: *** [source/numerics/CMakeFiles/obj_numerics_inst.dir/all] Error
2*
*Makefile:127: recipe for target 'all' failed*
*make: *** [all] Error *
The compile line script which I am using to install dealii is as follows:
*cmake -DCMAKE_BUILD_TYPE=Release -DDEAL_II_WITH_THREADS=OFF
-DDEAL_II_ALLOW_PLATFORM_INTROSPECTION=OFF -DCMAKE_C_COMPILER=cc
-DCMAKE_CXX_COMPILER=CC -DCMAKE_Fortran_COMPILER=ftn -DMPI_C_COMPILER=cc
-DMPI_CXX_COMPILER=CC -DMPI_Fortran_COMPILER=ftn
-DDEAL_II_CXX_FLAGS_RELEASE="-O3" -DDEAL_II_COMPONENT_EXAMPLES=OFF
-DDEAL_II_WITH_MPI=ON -DDEAL_II_WITH_64BIT_INDICES=ON
-DP4EST_DIR="/p4est/intel18.0_p4est_2.0" -DDEAL_II_WITH_PETSC=ON
-DPETSC_DIR=/petsc/intel_petsc3.9.4_double_64bit -DPETSC_ARCH=
-DDEAL_II_WITH_SLEPC=ON -DSLEPC_DIR=/slepc/intel_slepc3.9.2_double_64bit
-DLAPACK_FOUND=true -DLAPACK_DIR="${MKLROOT}/lib/intel64"
-DLAPACK_LIBRARIES="${MKLROOT}/lib/intel64/libmkl_intel_lp64.so;${MKLROOT}/lib/intel64/libmkl_core.so;${MKLROOT}/lib/intel64/libmkl_intel_thread.so"
-DLAPACK_LINKER_FLAGS="-liomp5 -lpthread -lm -ldl"
-DSCALAPACK_DIR="${MKLROOT}/lib/intel64"
-DSCALAPACK_LIBRARIES="${MKLROOT}/lib/intel64/libmkl_scalapack_lp64.so;${MKLROOT}/lib/intel64/libmkl_blacs_intelmpi_lp64.so"
-DCMAKE_INSTALL_PREFIX=/dealii/intel18_double_dealii9.0.1 ../dealii-9.0.1*
I am wondering what am I missing during my installation process on this
Cray machine. As you can see from above I do not give any AVX flags as
compilation flags. I only use -O3 flag. I am using login nodes for
compiling on a Cray supercomputer.
Regards
Phani
On Tue, Apr 2, 2019 at 8:03 AM Daniel Arndt <
daniel.ar...@iwr.uni-heidelberg.de> wrote:
> Phani,
>
> The relevant error message is:
>
> Performing C++ SOURCE FILE Test DEAL_II_HAVE_USABLE_FLAGS_RELEASE failed
> with the following output:
> Change Dir:
> /home/ComputationalSolidMechanics/yashu_mom145/dft-fe/dealii/buildDealii9.0.1/CMakeFiles/CMakeTmp
>
> Run Build Command:"/usr/bin/gmake" "cmTC_b428c/fast"
> /usr/bin/gmake -f CMakeFiles/cmTC_b428c.dir/build.make
> CMakeFiles/cmTC_b428c.dir/build
> gmake[1]: Entering directory
> '/home/ComputationalSolidMechanics/yashu_mom145/dft-fe/dealii/buildDealii9.0.1/CMakeFiles/CMakeTmp'
> Building CXX object CMakeFiles/cmTC_b428c.dir/src.cxx.o
> /opt/cray/pe/craype/2.5.13/bin/CC -DDEAL_II_HAVE_USABLE_FLAGS_RELEASE
> -fpic -ansi -w2 -diag-disable=remark -wd21 -wd68 -wd135 -wd175 -wd177
> -wd191 -wd193 -wd279 -wd327 -wd383 -wd981 -wd1418 -wd1478 -wd1572 -wd2259
> -wd2536 -wd3415 -wd15531 -wd111 -wd128 -wd185 -wd186 -wd280 -qopenmp-simd
> -std=c++11 -O2 -no-ansi-alias -ip -funroll-loops -O3 -o
> CMakeFiles/cmTC_b428c.dir/src.cxx.o -c
> /home/ComputationalSolidMechanics/yashu_mom145/dft-fe/dealii/buildDealii9.0.1/CMakeFiles/CMakeTmp/src.cxx
> gmake[1]: *** No rule to make target
> '/lib/intel64/libmkl_scalapack_lp64.so', needed by 'cmTC_b428c'. Stop.
> gmake[1]: Leaving directory
> '/home/ComputationalSolidMechanics/yashu_mom145/dft-fe/dealii/buildDealii9.0.1/CMakeFiles/CMakeTmp'
> Makefile:126: recipe for target 'cmTC_b428c/fast' failed
> gmake: *** [cmTC_b428c/fast] Error 2
>
> Source file was:
> int main(){ return 0; }
>
> It seems that "/lib/intel64/libmkl_scalapack_lp64.so" is not a valid file.
> Can you check if this file exists? Can you configure without SCALAPACK
> support?
>
> Best,
> Daniel
>
> --
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> For mailing list/forum options, see
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