Hello,
I develop distributed code like in step-40 and with the adaptive
mesh refinement like in step-42.
I was using ghosted Trilinos MPI vectors like
LA::MPI::Vector solution_vel_n;
initialized by
solution_vel_n.reinit (locally_owned_dofs_vel,
locally_relevant_dofs_vel,
MPI_COMM_WORLD);
I was able to assign to them from the output of solve
procedures in the following manner
(like in step-40
https://www.dealii.org/8.5.0/doxygen/deal.II/step_40.html#LaplaceProblemsolve
)
solution_vel_n = completely_distributed_solution;
where
LA::MPI::Vector completely_distributed_solution (locally_owned_dofs_vel,
MPI_COMM_WORLD);
"GMRES_solver()"
constraint_matrix_vel.distribute (completely_distributed_solution);
I am running fixed point iteration. I was successful in convergence on not
refined mesh, to be more specific on meshes without adaptive refinement.
After the adaptive refinement the convergence of residual stalled.
I have tried therefore to mimic the step-42 as closely as possible
https://www.dealii.org/8.5.0/doxygen/deal.II/step_42.html#PlasticityContactProblemrefine_grid
here is the following piece of code
if (transfer_solution)
{
TrilinosWrappers::MPI::Vector
<https://www.dealii.org/8.5.0/doxygen/deal.II/classTrilinosWrappers_1_1MPI_1_1Vector.html>
distributed_solution(locally_owned_dofs, mpi_communicator);
solution_transfer.interpolate(distributed_solution);
constraints_hanging_nodes.distribute(distributed_solution);
solution = distributed_solution;
...
Where solution is TrilinosWrappers::MPI::Vector
<https://www.dealii.org/8.5.0/doxygen/deal.II/classTrilinosWrappers_1_1MPI_1_1Vector.html>
initialized by
solution.reinit
<https://www.dealii.org/8.5.0/doxygen/deal.II/classVector.html#ac4a4dbef7dd65ef8ad35ae56b57d7c05>(locally_relevant_dofs,
mpi_communicator);
My refinement related code:
parallel::distributed::SolutionTransfer<dim, LA::MPI::Vector> sol_trans_vel
(
dof_handler_vel);
sol_trans_vel.prepare_for_coarsening_and_refinement (
solution_vel_n);
triang.execute_coarsening_and_refinement ();
nsSystem.setupSystem (solution_vel_n); ------->here i
re-distribute dofs, resize the vector solution_vel_n, matrix and
rhs, apply bc, rebuild constraint matrix
LA::MPI::Vector distributed_solution_vel (locally_owned_dofs_vel,
MPI_COMM_WORLD);
sol_trans_vel.interpolate (distributed_solution_vel);
constraint_matrix_vel.distribute (distributed_solution_vel);
solution_vel_n_helper.reinit (locally_relevant_dofs_vel,
MPI_COMM_WORLD);
solution_vel_n_helper = distributed_solution_vel;
solution_vel_n = solution_vel_n_helper;
I tried to do this in my code, however I have almost all data exchange in
the
form of distributed ghosted TrilinosWrappers::MPI::Vector
<https://www.dealii.org/8.5.0/doxygen/deal.II/classTrilinosWrappers_1_1MPI_1_1Vector.html>
.
from which I need to compute sometimes l2_norm.
I tried this (it works for non-refined case)
parallel::distributed::Vector<double> vel (locally_owned_dofs_vel,
locally_relevant_dofs_vel,
MPI_COMM_WORLD);
vel = crate.solution_vel_n;
this->pcout << " NORM tentative velocity :" << vel.l2_norm()
<< std::endl;
I got this error
--------------------------------------------------------
An error occurred in line <1099> of file
</home/mcapek/candis/candi_8_5/tmp/unpack/deal.II-v8.5.0/include/deal.II/lac/trilinos_vector_base.h>
in function
dealii::IndexSet
dealii::TrilinosWrappers::VectorBase::locally_owned_elements() const
The violated condition was:
owned_elements.size()==size()
Additional information:
The locally owned elements have not been properly initialized! This
happens for example if this object has been initialized with exactly one
overlapping IndexSet.
Stacktrace:
-----------
#0 /home/mcapek/candis/candi_8_5/deal.II-v8.5.0/lib/libdeal_II.g.so.8.5.0:
dealii::TrilinosWrappers::VectorBase::locally_owned_elements() const
#1 /home/mcapek/candis/candi_8_5/deal.II-v8.5.0/lib/libdeal_II.g.so.8.5.0:
dealii::LinearAlgebra::ReadWriteVector<double>::import(dealii::TrilinosWrappers::MPI::Vector
const&, dealii::VectorOperation::values,
std::shared_ptr<dealii::LinearAlgebra::CommunicationPatternBase const>)
#2 /home/mcapek/candis/candi_8_5/deal.II-v8.5.0/lib/libdeal_II.g.so.8.5.0:
dealii::LinearAlgebra::distributed::Vector<double>::operator=(dealii::TrilinosWrappers::MPI::Vector
const&)
#3 ./main: NSSystem<3>::assemble_and_solve_system(SolutionCrate&,
SolutionCrate&, double)
#4 ./main: NSSystem<3>::compute_solution(SolutionCrate&, SolutionCrate&,
double, double)
#5 ./main: NSSystem<3>::compute_solution_get_dt(SolutionCrate&,
SolutionCrate&, double, double)
#6 ./main: Main<3>::run()
#7 ./main: main
--------------------------------
Could You tell me please, how to compute the norm from the ghosted vector.
Maybe I did some false initialization in the procedure of refinement.
However, when I want to get values
(get_function_values() call) from the already interpolated vector in
assembly dealii does not complain.
Maybe could You recommend me some alternative to exchange of data to
ghosted vectors?
Thank You
MareK Capek
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