Attached my console log ( cygwin-time-lag.txt <http://cygwin.1069669.n5.nabble.com/file/n120585/cygwin-time-lag.txt> ) to shorten this message. nsswitch.conf contains only "files" entries. The time lag can be reproduced and is now shown at the "cygheap_user" log entry as described previously. I added the alias definition of 'ls' and the cygcheck info about the used cygwin1.dll.
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