So coming back to the cardreader/pcie problem, I have some messages from the kernel:

kernel: pci 0000:00:1c.1: [8086:8c12] type 01 class 0x060400
kernel: pci 0000:00:1c.1: PME# supported from D0 D3hot D3cold
kernel: pci 0000:00:1c.1: PCI bridge to [bus 03]
kernel: pci 0000:00:1c.1:   bridge window [mem 0x82300000-0x823fffff]
kernel: pci 0000:00:1c.1: PCI bridge to [bus 03]
kernel: pci 0000:00:1c.1:   bridge window [mem 0x82300000-0x823fffff]
kernel: pcieport 0000:00:1c.1: PME: Signaling with IRQ 27
kernel: pcieport 0000:00:1c.1: AER: enabled with IRQ 27
NetworkManager[462]: <info> [1614527732.3444] rfkill2: found Wi-Fi radio killswitch (at /sys/devices/pci0000:00/0000:00:1c.1/0000:03:00.0/ieee80211/phy0/rfkill2) (driver iwlwifi) kernel: pcieport 0000:00:1c.1: AER: Corrected error received: 0000:00:1c.1 kernel: pcieport 0000:00:1c.1: PCIe Bus Error: severity=Corrected, type=Physical Layer, (Receiver ID) kernel: pcieport 0000:00:1c.1: device [8086:8c12] error status/mask=00000001/00002000
kernel: pcieport 0000:00:1c.1:    [ 0] RxErr                  (First)
kernel: pcieport 0000:00:1c.1: AER: Corrected error received: 0000:00:1c.1 kernel: pcieport 0000:00:1c.1: PCIe Bus Error: severity=Corrected, type=Physical Layer, (Receiver ID) kernel: pcieport 0000:00:1c.1: device [8086:8c12] error status/mask=00000001/00002000
kernel: pcieport 0000:00:1c.1:    [ 0] RxErr                  (First)


I do not remember getting these on the stock bios. Could be unrelated, card reader is 1c0, wireless card is 1c1. At least according to the tree view:

-[0000:00]-+-00.0 Intel Corporation Xeon E3-1200 v3/4th Gen Core Processor DRAM Controller +-02.0 Intel Corporation 4th Gen Core Processor Integrated Graphics Controller +-03.0 Intel Corporation Xeon E3-1200 v3/4th Gen Core Processor HD Audio Controller
           +-04.0  Intel Corporation Device 0c03
+-14.0 Intel Corporation 8 Series/C220 Series Chipset Family USB xHCI +-16.0 Intel Corporation 8 Series/C220 Series Chipset Family MEI Controller #1
           +-19.0  Intel Corporation Ethernet Connection I217-LM
+-1a.0 Intel Corporation 8 Series/C220 Series Chipset Family USB EHCI #2 +-1b.0 Intel Corporation 8 Series/C220 Series Chipset High Definition Audio Controller +-1c.0-[02]----00.0 Realtek Semiconductor Co., Ltd. RTS5227 PCI Express Card Reader
           +-1c.1-[03]----00.0  Intel Corporation Wireless 7265
+-1d.0 Intel Corporation 8 Series/C220 Series Chipset Family USB EHCI #1
           +-1f.0  Intel Corporation QM87 Express LPC Controller
+-1f.2 Intel Corporation 8 Series/C220 Series Chipset Family 6-port SATA Controller 1 [AHCI mode] \-1f.3 Intel Corporation 8 Series/C220 Series Chipset Family SMBus Controller


I also have lspci -vv up on pastebin: https://pastebin.com/0hbb0vZg


Only debug on the rtsx_pci driver prints the registers. Any other ideas on troubleshooting this?
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