Dear all, Thanks to quite a few community members who responded, these are the tips: 1) PDB staff has graciously replied with some essential news that I've missed (see below); 2) mtz files (and more) could be downloaded from https://pdb-redo.eu/; 3) In coot, instead of using the "Fetch PDB and Map using EDS", one may simply use the next functionality on the pull-down menu, which is "Fetch PDB and Map using PDB-Redo".
*The EDMAPS.rcsb.org <http://edmaps.rcsb.org/> service for mtz files was retired on October 16, 2024 (see previous announcement <https://www.rcsb.org/news/feature/663baab365d8a8cacaf76fa4>. This service had been providing RCSB PDB-calculated electron density map coefficients for X-ray structures in the PDB archive. In June, this service stopped providing DSN6 formatted maps for these structures.* *Electron density map coefficients will instead be provided by wwPDB for all X-ray structures in the PDB archive. These map coefficients will be the same as those used in wwPDB Validation Reports.* *For more information, see the news item at: https://www.rcsb.org/news/feature/66ead31f2c751d5c77fbb706 <https://www.rcsb.org/news/feature/66ead31f2c751d5c77fbb706>* What a great community to be in - I'm grateful, -yong On Tue, Jan 14, 2025 at 9:37 AM Yong Tang <liutan...@gmail.com> wrote: > Dear all, > > > Taking a random PDB entry 8hbk as an example, at one point of time, we > have access to a phase file called 8hbk_phases.mtz under the download > section in https://www.rcsb.org/structure/8hbk However that option > doesn't seem to be available anymore in general. > > > I do understand PDBe offers electron density maps (8hbk.ccp4 and > 8hbk_diff.ccp4 separately)- is that our go-to nowadays when we would like > to inspect the maps of any particular PDB entry > https://www.ebi.ac.uk/pdbe/entry/pdb/8hbk > > > Please help – maybe I have missed something obvious? > > > Thank you! -yong > ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
