Mapmask with: SCALE SIGMA
Would also normalise the map. Best wishes, Jon Cooper. jon.b.coo...@protonmail.com Sent from Proton Mail Android -------- Original Message -------- On 05/12/2024 17:58, Foster, Samuel wrote: > In chimerax the commands for altering maps is described in > https://www.cgl.ucsf.edu/chimerax/docs/user/commands/volume.html#level with > rmsLevel and sdLevel giving coot like results, > > The volume viewer panel also gives an interactive element if you'd prefer? > > Bw, > > Samuel Foster MBioChem / Molecular and Cell Biology Research PhD Student > --------------------------------------------------------------- > > From: CCP4 bulletin board <CCP4BB@JISCMAIL.AC.UK> on behalf of Jon Cooper > <0000488a26d62010-dmarc-requ...@jiscmail.ac.uk> > Sent: Thursday, December 5, 2024 5:48:55 PM > To: CCP4BB@JISCMAIL.AC.UK <CCP4BB@JISCMAIL.AC.UK> > Subject: Re: [ccp4bb] map in coot and chimera > > ***CAUTION:*** This email was sent from an EXTERNAL source. Think before > clicking links or opening attachments. > > Hello, I would recommend a look at: > > gemmi sf2map --normalise > > Best wishes, Jon Cooper. > jon.b.coo...@protonmail.com > > Sent from Proton Mail Android > > -------- Original Message -------- > On 05/12/2024 17:30, Vitali James wrote: > >> Hi, >> I am visualizing the map in coot and chimera. How to view the map at the >> same unit or at the same contour in coot and chimera. For example if a map >> viewed in coot at 2 rmsd, how to adjust or convert the same contour to >> chimera map level. As chimerax uses the absolute density value for maps not >> the RMSD. Can someone please advise me? >> >> best >> J. Vitali >> >> --------------------------------------------------------------- >> >> To unsubscribe from the CCP4BB list, click the following link: >> https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > > --------------------------------------------------------------- > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > > --------------------------------------------------------------- > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
