In chimerax the commands for altering maps is described in https://www.cgl.ucsf.edu/chimerax/docs/user/commands/volume.html#level with rmsLevel and sdLevel giving coot like results,
The volume viewer panel also gives an interactive element if you'd prefer? Bw, Samuel Foster MBioChem / Molecular and Cell Biology Research PhD Student ________________________________ From: CCP4 bulletin board <CCP4BB@JISCMAIL.AC.UK> on behalf of Jon Cooper <0000488a26d62010-dmarc-requ...@jiscmail.ac.uk> Sent: Thursday, December 5, 2024 5:48:55 PM To: CCP4BB@JISCMAIL.AC.UK <CCP4BB@JISCMAIL.AC.UK> Subject: Re: [ccp4bb] map in coot and chimera ***CAUTION:*** This email was sent from an EXTERNAL source. Think before clicking links or opening attachments. Hello, I would recommend a look at: gemmi sf2map --normalise Best wishes, Jon Cooper. jon.b.coo...@protonmail.com Sent from Proton Mail Android -------- Original Message -------- On 05/12/2024 17:30, Vitali James wrote: Hi, I am visualizing the map in coot and chimera. How to view the map at the same unit or at the same contour in coot and chimera. For example if a map viewed in coot at 2 rmsd, how to adjust or convert the same contour to chimera map level. As chimerax uses the absolute density value for maps not the RMSD. Can someone please advise me? best J. Vitali ________________________________ To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 ________________________________ To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
