It is, but it is now hosted at https://pdb-redo.eu/dssp.
It is also in CCP4 as mkdssp (it is a slightly older version). Cheers, Robbie > -----Original Message----- > From: CCP4 bulletin board <CCP4BB@JISCMAIL.AC.UK> On Behalf Of Harry > Powell > Sent: Wednesday, November 13, 2024 16:23 > To: CCP4BB@JISCMAIL.AC.UK > Subject: Re: [ccp4bb] secondary structure assignment to sequence > > Presumably DSSP is still available - > > https://swift.cmbi.umcn.nl/gv/dssp/ > > Harry > > > On 13 Nov 2024, at 12:18, Marc Graille > <marc.grai...@polytechnique.edu> wrote: > > > > Dear Vitali, > > > > I used to do it with Stride server. > > > > Stride > > wzw.tum.de > > > > > > > > Hope this helps, > > > > Best wishes, > > > > Marc > > > > > > — > > Marc GRAILLE, PhD > > DR1-CNRS > > > > Head of the team: “Translation and degradation of eukaryotic mRNAs” > > > > Laboratoire de Biologie Structurale de la Cellule (BIOC); UMR7654; > > CNRS ÉCOLE POLYTECHNIQUE > > 91128 PALAISEAU CEDEX > > FRANCE > > 📞: +33 (0)1 69 33 48 90 > > https://portail.polytechnique.edu/bioc/en/research/coupling-between-tr > > anslation-and-mrna-degradation-eukaryotes > > > > Responses to emails are not expected outside of your normal working > hours. > > > > <Signature-email.png> > > > >> Le 13 nov. 2024 à 13:14, Vitali James <jirivit...@gmail.com> a écrit : > >> > >> Dear User, > >> Is there any tool that can assign the secondary structure to the sequence > of protein in the PDB. > >> In the past I have used a 2Struc: the secondary structure server, but it's > not available any more. > >> Is there any easy way to list the sequence and ss below the sequence of > provided PDB models. > >> best > >> J. Vitali > >> > >> To unsubscribe from the CCP4BB list, click the following link: > >> https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > >> > > > > > > To unsubscribe from the CCP4BB list, click the following link: > > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > > > > ############################################################### > ######### > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > > This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a > mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at > https://www.jiscmail.ac.uk/policyandsecurity/ ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
