Hi folks “Can of worms” is how this could be described!
From various different sources (many thanks Paul, Mitch, Robbie) I have now managed to obtain (inter alia) lists of 31, 189, 863 and 916 modified amino acids - and there are other, longer (and possibly shorter and equimetric [is that even a word?] lists that I could create if I want to be more comprehensive! It’s certainly _possible_ that some of the members of an individual list are duplicates, but for my current purposes these should suffice nearly all the time (and for those cases where the list falls short, I would expect people to raise the issue directly with me…) Once more, I knew this would be the place to ask! Harry > On 24 Jun 2024, at 13:40, Robbie Joosten <robbie_joos...@hotmail.com> wrote: > > Hi Harry, > > A BSc student in our lab just had a look at this. Here is the list of > mappings pdb-redo uses: > https://github.com/PDB-REDO/pdb-redo-main/blob/trunk/tools/pdb-redo-data.cif > (second to last loop). > > Cheers, > Robbie > > pdb-redo-main/tools/pdb-redo-data.cif at trunk · PDB-REDO/pdb-redo-main > core pdb-redo script, tools and data files. Contribute to > PDB-REDO/pdb-redo-main development by creating an account on GitHub. > github.com > > From: CCP4 bulletin board <CCP4BB@JISCMAIL.AC.UK> on behalf of Harry Powell > <0000193323b1e616-dmarc-requ...@jiscmail.ac.uk> > Sent: Monday, June 24, 2024 2:03 PM > To: CCP4BB@JISCMAIL.AC.UK <CCP4BB@JISCMAIL.AC.UK> > Subject: [ccp4bb] List of 3-letter codes of modified amino acids > > Hi > > An internet search doesn’t yield an obvious list of these (I did find a paper > DOI:10.1016/j.jmgm.2006.08.004 that says there are 293, but the link included > appears to be dead - http://deposit.pdb.org/hetdictionary.txt). > > I’m almost convinced that this has been asked here previously (if not > recently), but a quick search through ccp4bb postings has not revealed it to > me. > > Can anyone help? > > Harry > ######################################################################## > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > > This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing > list hosted by www.jiscmail.ac.uk, terms & conditions are available at > https://www.jiscmail.ac.uk/policyandsecurity/ ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
