Dear Marc,
I'm not sure if there are tools to find global similarity, but you can
use tools like NASSAM (http://211.25.251.163/nassam/), WebFR3D
(https://www.bgsu.edu/research/rna/web-applications/webfr3d.html) or
RAG3D (http://www.biomath.nyu.edu/?q=RAG3D) to do substructure search.
Kind regards,
Deborah
On 24/06/2024 10:05, Marc Graille wrote:
Hello,
I am looking for a server that finds structural similarities between
the structure of an RNA and all RNA structures present in the PDB,
pretty much like DALI or PDB-eFold do for proteins.
Does anyone know if such server exists?
Thanks a loot for your help,
Best wishes,
Marc
—
*Marc GRAILLE, PhD*
DR1-CNRS
Head of the team: “Translation and degradation of eukaryotic mRNAs”
Laboratoire de Biologie Structurale de la Cellule (BIOC); UMR7654; CNRS
*ÉCOLE POLYTECHNIQUE*
91128 PALAISEAU CEDEX
FRANCE
📞: +33 (0)1 69 33 48 90
https://portail.polytechnique.edu/bioc/en/research/coupling-between-translation-and-mrna-degradation-eukaryotes
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Deborah Harrus, Ph.D.
PDBe Archive Project Leader, Biocuration Lead
PDBe - Protein Data Bank in Europe
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD UK
http://www.PDBe.org
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