Thank you Pavel,

very useful.

I imagine I have to invert the hand *beforehand* if it is not the correct one :-)

Just saying - checking hand and picking the better one would be a nice feature to implement in this tool.

P

On 25-01-2023 17:06, Pavel Afonine wrote:
Hi Rams,

phenix.match_maps

will superpose maps and models. Totally general: target/moving boxes
(unit cells) and symmetry can be different, gridding can be different
too.

I can help off list should you need any assistance!

Pavel

On Wed, Jan 25, 2023 at 6:30 AM Subramanian, Ramaswamy
<subra...@purdue.edu> wrote:

Hi All,

I have two maps - both cryo-EM.  One with and one without ligand.  I
am trying to superpose them and I cannot seem to get ChimeraX to
work.  I then tried VESPER and that also does not work.

The built models superpose very well.

What is the best way to superpose maps.

Thank you.

Rams
subra...@purdue.edu

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