Hi Kyle
DynDom gives you the angle of the relative domain movement, which I also
find a good quantitative measure.
http://dyndom.cmp.uea.ac.uk/dyndom/runDyndom.jsp
Best Sabine
On 12/11/2021 15:13, Edwin Pozharski wrote:
https://pymolwiki.org/index.php/Rms_cur
<https://pymolwiki.org/index.php/Rms_cur>
On Fri, Nov 12, 2021, 9:05 AM Kyle Gregory
<00003632e92fcc15-dmarc-requ...@jiscmail.ac.uk
<mailto:00003632e92fcc15-dmarc-requ...@jiscmail.ac.uk>> wrote:
Dear CCP4 bulletin board,
I was wondering if there are any tools to determine the RMSD of
the entire molecule (two domains) when only aligning one domain,
the point i'm trying to make is a variation in domain positioning
relative to one another but I'd like to quantify it. LSQ alignment
in coot reports RMSD for the aligned porition only, as does the
alignment tools on ccp4 cloud (unless i've missed a feature)
Any advice would be greatly appreciated.
Kind regards,
Kyle
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