Neno Can you tell me what version of Phenix you are using? and send me the file in question? Off-list.\
NB. Any files sent to me will be held in strictest confidence. Cheers Nigel --- Nigel W. Moriarty Building 33R0349, Molecular Biophysics and Integrated Bioimaging Lawrence Berkeley National Laboratory Berkeley, CA 94720-8235 Phone : 510-486-5709 Email : nwmoria...@lbl.gov Fax : 510-486-5909 Web : CCI.LBL.gov ORCID : orcid.org/0000-0001-8857-9464 On Fri, Sep 17, 2021 at 4:36 AM Robbie Joosten <robbie_joos...@hotmail.com> wrote: > Yes, you can use DSSP 4.0 (https://github.com/PDB-REDO/dssp) to directly > annotate your structure model in PDB or mmCIF format. The latter is > recommended. > > Cheers, > Robbie > > > -----Original Message----- > > From: CCP4 bulletin board <CCP4BB@JISCMAIL.AC.UK> On Behalf Of Neno > > Vuksanovic > > Sent: Thursday, September 16, 2021 22:36 > > To: CCP4BB@JISCMAIL.AC.UK > > Subject: [ccp4bb] PDB file secondary structure annotations > > > > Dear All, > > > > I noticed that files available in the Protein Data Bank contain secondary > > structure information which allows for them to be imported in a program > such > > as BioRender in order to make structural figures. However, the PDB files > > generated by PHENIX for structures that I haven't deposited yet do not > contain > > such information so BioRender displays them as coils. Is there an easy > way to > > add secondary structure information to a PDB file? > > > > Best Regards, > > Neno > > > > > > ________________________________ > > > > > > To unsubscribe from the CCP4BB list, click the following link: > > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > > > ######################################################################## > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > > This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a > mailing list hosted by www.jiscmail.ac.uk, terms & conditions are > available at https://www.jiscmail.ac.uk/policyandsecurity/ > ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
