Hi, You can use Scan Prosite https://prosite.expasy.org/scanprosite/ Build your motif according to the pattern syntax described in the help button (or here https://prosite.expasy.org/scanprosite/scanprosite_doc.html#mo_motifs <https://prosite.expasy.org/scanprosite/scanprosite_doc.html#mo_motifs>) Select option 2. In Step 2 click on filters and use Escherichia coli as the taxonomy
I hope that helps Best Ricardo On Sun, Sep 5, 2021 at 11:34 AM Cryo EM <cryoemfa...@gmail.com> wrote: > Hi all, > > I want to search NCBI/PDB for all E.coli proteins with a specific sequence > motif. > Is there any server/software in which I can search and display all the > proteins in E.coli with this specific sequence motif? > Suggestions are highly appreciated. > > Thanks! > > > > ------------------------------ > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > -- Ricardo Padua HHMI Research Specialist Kern Lab Dept. of Biochemistry, MS009 Brandeis University Waltham, MA 02454, USA E-mail: rpa...@brandeis.edu ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
